© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0389100.1
AACTCGCTGTCAACCGCATTTTTTATGCAGAACAGAGAACAGACAAAGCCTTCAGAAAGACACGACGGACAGTTTGAGTTAACAGCGAGGCTCAACTGTTTCCCAGGGTATCAGCGGTTAATCGGTTATTAGCGACAGGACGACGATGCCGCGATCACTCGCCGTTGTCGATCACCTTGGCGCCGTCCATCCAGATGATGCAGCGGATGCTCTTCCCCTGCGTGAGCAGCTCGAACGCCCTGTTGATCTCCTCGAACCCCATCTCGTGCGTGATGAACTCCTCCAGCTCCAGCTCCTTGTCCAGGTACTTCTGAGCCAGCATCGGGATGTCGTTCTTGGGCTTGATGCCGCCGAAGAGCGACCCGATGACCGATCTTCCCCGGAGGATCTCGTGCGACGGGATGCTGATCGGCGCCTTGTTGCCGGAGACGCCGAGCAGGATCGTCTTCCCCCACCCATTTCGAGTGCTTTGGAAGGCTTCCGCCATGACCGAAGTCGAGCCGATGCACTCGAAGCAGTAGTCGGCGCCGCCGCCCCCGGTCATCTCCTTGATGACCTCGCTCACGGTCTTCCCGCCGGTATCGTTCGGGTTGATGAAGTCGGTCATGCCCAGCCTCTTACCAACGTCGAATTTGTCCGGGTTCAGGTCCACCCCAATAATCCTCTTAGCCCCACGCATCCTCGCCCCTTGAGCAACCGCTAACCCAACGGCACCCAGGCCGAACACGGCGACACTCGAGCCGGGCTCCACTGCTGCCACCTTCCATGCCGCACCAACACCTGCACGCACCAATCAAAGTCGCAGTCAGAAATCGATCCGATAACACACGACTGCGTGTACTGCGCCAATGGGAGCCATGCATCCGCTACTGTAGCGGCAGAGACCACATGCCAAACAACTGCAGTTAAGGCTGAGTTCAAGTAGGAGCACACATCTTGCTCCGCGTCTTCTAGAGCTAGCCAAACAGTTTTAGTTTCACCTAAAATAGCAGTGTAGTTGGATAGAACGTTGTTATAAAATAAATTAGTGAGGTGGAGCTGGGTTTAGGTCCACCCCTATAGTTCAATTTTTTTGAGAGAGCTCAATCCAGCTCCACTCCCATTTTAAGTGGAGCTGAAACTGTTTGGCTGAGCTTCAGCTCTAGCTCCAGAAGAGATGGAGATAGAGCTGGAGCTGTGCTAAACCGATCCTCACTCCAGACTCAACTCACGTAGCTAAAATTAGGAGTTGAAACTTTGCCAAACAGACCCTACGTATATTGGCTTGGCCTTATACACAACGAAAACAAGTTGTTAGTGTATGATTAAATTGAGAATTAACTATTCTAAATTTGAAAATTATTTTTGTTTTTTAAAACTTCTGTAGAGAAAATATTTCATAAAATATATCATTTAGCAGTTTGGAAAGTCCTCTCGAAATAAGAAAGTTGTTGTTTTGAACCGATGAATAGAACTCAACTATAAAATACTTGAGGCAGAAACCACTTTAAAGTTTGTGTTTTTTTCTTCTTCTGTTTTTACCGGTGGAAATGCCACAACTGAGGAGGCATGCCATCGCCGGTGGGAATCCAACATCGAGCTTGACAATGTGGGTGATGTCAACGACGGTGTACTCGGCGAAGCTGGAGACGGAGAGGAAGTGGCGGATGGGCTCGCCGGTGGAGACGGAGGAGAAGCGCGTCGTGCGGTCGCGAGGCATGAGGCCGGCGACGTTGGGCAGTTTGGAGCAGAGGTTGCTGCGGTCGGAGAGGCAGTCAGGGCACTCACTGCACTGCGCGGCGAACACCGGCACCACCATGTCACCCACCGCCACCTCCTGCACGTGCTCCCCCACGCTCTCCACCACACCGACTGCTTCATGGCCAAAGATAGACGGATGATTGCCTTCCATACGCCAGAAGGTGATGTCCGTGTGGCAGATGGATGTGCAGAGGATCTTGATCCGGACCTCGTGCGCCCGCGGCGGCGCCACCTCCACCTCCTCCATCTCCAGCGGCTGCCCGGCCACCCTGCTCACCGCCGCTCTGCACCTGATGGACTTTGCAGCAGCAGTGTTCATCTGCTCCATTTCCAGGAAGCTAGCCTCTCCCCTCTATCCTTGTTGGTGTTTGGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0389100.1 | 7 | 25697318 | G | C |
| Osa07LNT0389100.1 | 7 | 25697364 | A | G |
| Osa07LNT0389100.1 | 7 | 25697828 | C | T |
| Osa07LNT0389100.1 | 7 | 25697843 | C | T |
| Osa07LNT0389100.1 | 7 | 25698471 | A | T |
| Osa07LNT0389100.1 | 7 | 25698519 | A | G |
| Osa07LNT0389100.1 | 7 | 25698965 | A | C |
| Osa07LNT0389100.1 | 7 | 25699390 | C | G |
| Osa07LNT0389100.1 | 7 | 25701348 | T | C |
| Osa07LNT0389100.1 | 7 | 25702141 | T | G |
| Osa07LNT0389100.1 | 7 | 25702480 | T | A |
| Osa07LNT0389100.1 | 7 | 25701716 | A | G |
| Osa07LNT0389100.1 | 7 | 25701773 | A | G |
| Osa07LNT0389100.1 | 7 | 25701972 | T | C |
| Osa07LNT0389100.1 | 7 | 25702539 | T | C |
| Osa07LNT0389100.1 | 7 | 25702611 | T | C |
| Osa07LNT0389100.1 | 7 | 25702665 | A | G |
| Osa07LNT0389100.1 | 7 | 25702684 | T | C |
| Osa07LNT0389100.1 | 7 | 25702696 | T | C |
| Osa07LNT0389100.1 | 7 | 25702701 | A | G |
| Osa07LNT0389100.1 | 7 | 25702262 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa07LNT0389100.1 | DTM_#DNAt_MULE_japo_Os0314 | Chr7 | - | 25701501 | 25701996 | 495 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0389100.1 | osa-miR5543 | Cleavage | 4.5 | 10.377 | 1 | 21 |
| Osa07LNT0389100.1 | osa-miR5805 | Translation | 4.5 | 21.971 | 1 | 24 |
| Osa07LNT0389100.1 | osa-miR5821 | Translation | 4.5 | 19.864 | 1 | 21 |
| Osa07LNT0389100.1 | osa-miR5831 | Translation | 5.0 | 10.12 | 1 | 24 |
| Osa07LNT0389100.1 | osa-miR5179 | Translation | 4.5 | 22.555 | 1 | 21 |
| Osa07LNT0389100.1 | osa-miR2876-3p | Cleavage | 5.0 | 24.846 | 1 | 21 |
| Osa07LNT0389100.1 | osa-miR5073 | Translation | 5.0 | 19.896 | 1 | 23 |
| Osa07LNT0389100.1 | osa-miR5076 | Translation | 3.5 | 22.005 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0389100.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0389100.1 | 7 | nan | Physiological trait | Eating quality | R1245 | R1789 |
| Osa07LNT0389100.1 | 7 | nan | Physiological trait | Eating quality | R1245 | RM234 |
| Osa07LNT0389100.1 | 7 | nan | Resistance or Tolerance | Other soil stress tolerance | R1245 | R1789 |
| Osa07LNT0389100.1 | 7 | qSDS-7-2 | Physiological trait | Germination/dormancy | RM320 | RM234 |
| Osa07LNT0389100.1 | 7 | qCIVG7-2 | Resistance or Tolerance | Cold tolerance | RM336 | RM118 |
| Osa07LNT0389100.1 | 7 | qLVG7-2 | Resistance or Tolerance | Cold tolerance | RM336 | RM118 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)