\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0389600.1

CAAAGCCCACTGATTAAATTATCTACTGACTAGAGTTAGTGATACAGCAGTATATGACATACTCACGTTATTCTCTCTCACACTCGCTGCATCTTGCAAACGTGTGGAGATCTACTTAATTAGTAAACCTTGTTACTAGTGATTTGATTAATCCAAGCTAAAAACCAAAATTACCATGACCATATTCAGTCGCAGTAACAACAATTAACAGTAGAGCAACGCCTCTAATCCCCTTCTTTTTTTTTCCTAAGCGAAAACTACGCAGATCCCAAGTGATTAATCAAGAGAGAAATCAAGATCAAGAGGACTTCAGGATCTGTGTAGTTTTCGATTTTTCTTTTTTCAGGTTGGGCTAGTGATGAACTCGCTGCTCACTCTCGCTTACGCTACGATTCTTGCATGGTTTGGTGGTGGTGTGGATTAGAAGGTGTAATCCATGGCCGCGTCGAGCAAGCTGCCACTCTCGATGCCGTCGGCGTCGGCGAACAGCCACGACTCGATGGCGGAGAGCTGCGTCTCGTCGCCGGCGTCGGCGGCGGCGGCGGCGGTGACGGTCGGCTTTGTCTCGTACTCGAAGGCGGACGCGGGCGCCGCCGCTGCGGACAAGGCCGTGCCGCCGTAGGACACCTCGGAGGCTTCCGACGAGCCGGACGCGCTCTCGGTGGCGCCGGGGGTGGCCGGCCCGCTGCCGGCGGCGCGCCTGCCGCCGCCGCCGCCCTTCTTCCGGGCCCACCCGTCGAGCATCCGGGAGATGTTCTCGGTGGTGAGGACGTAGCCGGCGGATGACGGGGAGCACTGCGACGCCCCCGACGTGCTCGACGCGGCGGGGCTATCGGCGCCGGCGGACGCTGCTGCTCCGGTGGTGGCGCCGCCTCCCCCCGCGGCGGCGTTGGCGGCGTCGGGCTGATGCGGTGGCTTGACGTCGTCGAGCGACGTGAGCGCCTCGCGGAGCGCGCGGCGCGCCATGTCGATGTCGGTCTGCAGGCGCCGCTCCCACTGCCCCTTGGACGACGACGCGGGCCTCTGCGCGGCGGGCTTCGGGGAGACCGCGTCGCCGGCGGCGCCACCGTCTCCGTCACCGCCGGCGCCGCCGCCCTGCAGCTTGCGCTTGAGGTGGGTGTTCCAGTAGTTCTTGATGTCGTTGTCCGTGCGCTCGGGGAGGTACGACGCGATGGCCGCCCAGCGGTTGCCGAGGAGCGCCTGGAGGTGGACGATGAGCTTCTCCTCCTGGTCGGTGAAGTTTCCCCGCTTGATCCCGGGCCTCAGGTAGTTGGTCCACCGGAGCCTACAGCTCTTGCTGCACCGCATCAGCCCTGTTCTGGTCGGGACGGCGCGCCAGTTGCCGGGGCCGTGCTCCTGGACGTAGGAGACGAGGACGAGGTCCTCCTCCGGCGTCCACGGGCCCTTCTTGACGCCGTCCTTGTCGCAGCACGGCGGCCTCACCATGGTCGATGGAGATCCAAGAACTGGAAAGCTGGATTTCTCAGATCGATGGATGGATGGATGAGTTTGATGTTGCAAGAGAGGAGGAGAGTTTGGTGGTGGAGAGTGAGAGGAAGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.502049
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0389600.1 osa-miR171f-5p Cleavage 5.0 11.466 1 21
Osa07LNT0389600.1 osa-miR1860-5p Translation 4.5 20.226 1 21
Osa07LNT0389600.1 osa-miR2093-3p Translation 5.0 20.335 1 20
Osa07LNT0389600.1 osa-miR2876-5p Translation 5.0 16.367 1 21
Osa07LNT0389600.1 osa-miR3979-3p Cleavage 4.5 20.804 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0389600.1 7 nan Physiological trait Eating quality CDO497 BCD855
Osa07LNT0389600.1 7 nan Resistance or Tolerance Other soil stress tolerance R1245 R1789
Osa07LNT0389600.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0389600.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0389600.1 7 nan Physiological trait Eating quality R1245 R1789
Osa07LNT0389600.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0389600.1 7 nan Physiological trait Eating quality R1245 RM234
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus