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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0390900.1

TCATTTAGCTGCCCATAATCCCTTTTTTGAACACTTCTTGTTTATCTTGACTACTCTCTGTCTCTGGTTGCCGCTTTCTTCATCAGTTTCTTTCTTGTCCTGTATTGTTACATCAACTTTAACGATGTGATGATCAGATGTTCCTTTTGAGGATATGACCGTGTAAGATCCTGGCACGAACTTGTAGGGAGAGTTTGGTGAGGCCAGTATGTAATCCACCCTTGTGCCATACTTGCATGTCCCTTGTACATCTGAAGTTCATAAAAAGTTCAGATATTCAGTAACCACTATACAGCAACAGCGAGTAACTGAAAAACTAACAAAGATCTTGTGTTTCATAAGGTAGCTGAAATTGGTTGTGCAATGTGATAAATGCACCTTAGGTCATCAATTTTTAGAGGAAATCATCTAAAAATGAGGAGCTGCAGTCCATCATATACATCATAGGTTCAGTAAAGAGCAGATTAACTGAAATGAAACTACTTTGTTGGCCATATGGTATCTGAACAAGCTGAGAAATGTAACCTCTCACCTTGCCCTTTAGCAACAACCACCACAGCCTCACATTCTCCTGCAAAATCCTTGGCATCAACATACTGCTTCCCCTTCAGGTACTTCATCACCTCCGCCTTCGGCGTCGGCTTCCCGATCTCCTCATAGTACTTGACGATGTCGGCCCATCGCTCGTCGGAGTAGTCGGTGCCGTCGAGCGCATTGAGCCCTCCGGTGAGGATGTGAGGGCCATCGCTGGAGCGCAGTATGGCGTTCATCTGCTTCATCCTCCAGCTCTCATCAAGGTGGTCGAGATGTGTGCAGTGGAAGTTGACCTCCCCGGCTCTCGGAACCTCAATGGTGGCCCTCAGCACGTTCCGGAAGTCGGACTGGTCGGCGACGCGCTGCGACTTCCAGCGCTTGATAGGCCACCGGGAGAGCACGGCGTTGCCGTACTCCGGCGCCCAGCTCTCGGCGAACACGTACCGCATGCCGAGCCCCTCGGCGAGCTCCGACAGCGGGCTCATCCCGCGCTCCTCCTCCGCGCGCACGTTCTGCAGCCCGATGATGTCGGCGCCCACCTCCCGGAGCACCTCTTCCACGCTCCGCCGCCGCCCTTCCGCGCCGCCGTTCAGCTGCTGCGTCGCCGCCGGCGTGGTTGTGGCGGTGGTGGTGCTCCTCGCCGCCGTGCTGCCTAGCTTGCTCCTCTCCCGGGAGATCTCGTTGTCCTGGAGGTTGATGGACACGCGCGCCTTGCTCGCCGTTCGCGCCAGGCTCGCCTGCGCCTTCAGGATGCCCTTGGGTCGCCGCCCGCCGCCGGCGGCGGGGGTGGTGACACGCCGCGCGGTCTCGGTAGCTGTCTCTGCGGACGACGCCGCCGCCACGGCCGGCGCCATGGAGAACATCGCGGCGTTGAACGTCGCCACGCGGATGGTCACCGCCTCCCCCGTCGCGCCATCGCCGCGATTATCCCGACGCGCTCCCGCTGCCGCCGCCGCCGCCTCCTTCCTCCCGTTCGACCCCAACCGCCGCACGGTCACCCTCGCCTTGCCCTCCGCGCCGCCGTGGCGGCGCCGGCGCGGCCGCGGGTGCAGCGCCCGGAACCCGGCGAGCACGCGTCGCAGCAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.693845
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0390900.1 7 26922945 T A
Osa07LNT0390900.1 7 26919097 A G
Osa07LNT0390900.1 7 26919424 T G
Osa07LNT0390900.1 7 26919749 A G
Osa07LNT0390900.1 7 26919756 T C
Osa07LNT0390900.1 7 26920531 A C
Osa07LNT0390900.1 7 26920551 T C
Osa07LNT0390900.1 7 26920716 G A
Osa07LNT0390900.1 7 26920778 G C
Osa07LNT0390900.1 7 26920799 G T
Osa07LNT0390900.1 7 26920823 T C
Osa07LNT0390900.1 7 26920885 A C
Osa07LNT0390900.1 7 26921144 G C
Osa07LNT0390900.1 7 26921424 T C
Osa07LNT0390900.1 7 26922374 C T
Osa07LNT0390900.1 7 26922410 T C
Osa07LNT0390900.1 7 26922794 T A
Osa07LNT0390900.1 7 26922848 T C
Osa07LNT0390900.1 7 26922948 T C
Osa07LNT0390900.1 7 26923462 T C
Osa07LNT0390900.1 7 26923580 G C
Osa07LNT0390900.1 7 26922873 A G
Osa07LNT0390900.1 7 26920126 T C
Osa07LNT0390900.1 7 26920288 T A
Osa07LNT0390900.1 7 26920406 A G
Osa07LNT0390900.1 7 26920448 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0390900.1 osa-miR5820 Translation 5.0 11.825 1 21
Osa07LNT0390900.1 osa-miR395o Cleavage 5.0 16.758 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0390900.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0390900.1 7 nan Physiological trait Eating quality R1245 R1789
Osa07LNT0390900.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0390900.1 7 hd7a Physiological trait Flowering RM18 R1789
Osa07LNT0390900.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0390900.1 7 nan Resistance or Tolerance Other soil stress tolerance R1245 R1789
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus