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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0391600.1

TCGTAACTAAGAAGGCTTTCAGCGATGTATAAATATGCTTGCTGCTATGCGAAGAACGCATGTTGGTTACAGAACAAAGGCTATGTTAAAGCTCTTCGTATTTCATTTGATCGAAGCATTGTTCCGATGGGCTTCATAACTCAGCCCAATTTCCAGGGATCGCTAATCTATCAGACTATACATGAAGACATTTCGTACTAGTAAGGGTATATATAAATGGCATGCACTTATTCATACAGTTTGCACGTATGAGTTAGGATCTAATTTCTCACATAAGCATGTGGAAACAATCTGGGGAAGTAAGTTTGCTTTGCCTTGACAATCGACCAATACAGAAAGAAGCAAGGGATATGAACAATGGCCATGGCGAGGTACCATAGAGGAGCCCCTGACGATGAAAGGTCAAGAAATGGGTATGGCCACCAGGATATAGCTCCACAAGCATGAAGGACCCATTGGAAGGTTACATAGGAGCAGCTCCAAAATACAAAGAAAGCCAGGCGGTACCAGGGGAAGGGCATATTGTTGAGAAATGTGTCTATCAGTAAAAGAACAGCATTAAGAGAATGCATGCCATCAGTGATCAAGGAAAGTCCAAACTTATCACGGTAAAAGAATGGCACAAGTAGTCCCCAAAATGTGATATCAGTCAGCATTGTTGCACCTGCACTAGTCTGGTAAATGATTTGCATGCAACGTCCCCATAATCCAGCTCTTTTCTCATTTGCTATTTGTTCATGATAGTTTGTTATCTTCTCCTCATCCCTTTTCATCTCGCCAGAAGAAGTGGAAAACTCACGATTTTCCACATCGTCACTAAGAAATTCATGGGATTCATCAGCTTTCTTCAAGTTTTTCTTTGAGTAAACCCAACATCCGTGAGCTGATATAGCAGTTGCAAACGCAAAATATATGGTGACTAATAAAAAGGTCCACTGGGTGTAGAAGAAGAAGACGTCGATGCCATGGCCGACGAGGAGGCGGACGAGGAGGGCGACGGCGACATCACCCCCCCGGCGACGCGCGGTTGACCTTTGCTTGAGCCTCGCGTCGCGTAGCGGCAATGGAGGTGCGGCGCGGGGGAATTTTGGGGTAGTTGGGGTTGGGTTGTTGACGGTGTGCGACGCTGCGACTGCGAGTCCGACCGCGACTCGGCGAGCGAGGCGGTGAAGTTGCGGAAGTAGACGCGGAGACGGAGATTGGAGGGAAAGGTTAGCATTCGGCCACGG

Coding Potentia
Explanation CPC Score
noncoding -1.09617
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0391600.1 7 27701768 A G
Osa07LNT0391600.1 7 27701679 G C
Osa07LNT0391600.1 7 27704010 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0391600.1 osa-miR5076 Translation 4.0 13.688 1 22
Osa07LNT0391600.1 osa-miR5078 Translation 4.5 21.295 1 21
Osa07LNT0391600.1 osa-miR5488 Translation 5.0 13.307 1 21
Osa07LNT0391600.1 osa-miR5823 Cleavage 5.0 18.996 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0391600.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0391600.1 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0391600.1 7 qDTH-7 Physiological trait Flowering S10832 RM1306
Osa07LNT0391600.1 7 S23(t) Physiological trait Sterility R1789 C213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus