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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0392400.2

GTCAGGATGGCATTCTTCACTTTGTATAGCGAGCCTCCTCGGCGAGCTTAGCTGCTTACAGCTTCTACAAGCGGGGCAGCATGAACACCAAGGGCTCCACAATTTCTACAGCACTAGTAGTAACACACCAGTAAAGAATTTGTGCATGAGTGCAAGGTCATTTTACGTGGGAATCGTAAACGTCAAAAACAGTTTCAGGGATGACCGTGGGCAACTTGTCTATGTACATGAAGAGCCGCCTAAGATTTTCCTTTCGGACCGTCGCTATGTCCACTATGTCCCTGTTATCTGTATATATCCATAGGTCGGCCGAGTTCACTCTCTTGAGACTATCGCGGCAGAATGGACAAGACTGGGATCTTGATCTCCAGTCACGGTAGCATTTAATGCACATAGCATGGCTACAAGTTGGAAGAACTACTTTGCCATTTATCTCCATACATATGCCACATTCCTCCTCGATGTTATCATCAATCTCTGAAATCACCATTTTCTGATCTTCATCTCGTCTTCTATATCTTTCTATACAGATTGCCTTTTGTTTCTTGTCTTCCACTTCATTGATCCCTTCATGTAGTTGCATCAAAGAAGGAAATATGACAGCATAGAATTCCCTAATGCTTGCTTTCCTTTCATGAGCAGACATGGTGGTAGTCCCATCAGCATAAACCTTATAAATGAGAATCCTCAACAGCCCAAGTGCACCAGCAAGGTTGCAATCTGTCCACTGCACAAGAAAAAGGAAGAAGTGTGCAGCTGGACAGTATGACATTCTCATCTGAAGACAGGCGCCATCATATTCCCTTCTAAATTCAGCAGCAAGCGAGTTGGCGTGCTGGATGTCGGCCTCGAGCACCTTCAGCGAGTCCCTGAACGACCTGCCCATCGACGAACTCCGCCGCCGCCGTGACCATCCACCAAACCCAAAACCTCCCCCCGAACCCTACCTCCCGATCTCGCAGCGTCACCTCGCCGGCTTCCTCCTCCTCCTCCGGTGGTGTACGGCTCGGCTCGGGGTCAGGTCAGCTC

Coding Potentia
Explanation CPC Score
noncoding -1.1613
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0392400.2 7 27916519 T C
Osa07LNT0392400.2 7 27917139 A G
Osa07LNT0392400.2 7 27918004 T A
Osa07LNT0392400.2 7 27918894 C G
Osa07LNT0392400.2 7 27918908 A G
Osa07LNT0392400.2 7 27919286 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0392400.2 osa-miR6253 Cleavage 4.0 16.361 1 22
Osa07LNT0392400.2 osa-miR1854-3p Translation 4.5 17.744 1 22
Osa07LNT0392400.2 osa-miR2925 Cleavage 3.0 13.282 1 19
Osa07LNT0392400.2 osa-miR1875 Cleavage 4.5 8.143 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0392400.2 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0392400.2 7 qDTH-7 Physiological trait Flowering S10832 RM1306
Osa07LNT0392400.2 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0392400.2 7 S23(t) Physiological trait Sterility R1789 C213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus