>Osa07LNT0392800.2

TAATCGAATGTCGGAACTACCTTATGCTTGACCAAATGCCAGATCCAATTACATGGCTTGTTCATATGCATTAGTTGTGTGTAATGCAACAAGAGAACTGTGCCTAGAAATTCTGGCGATCTTCAAGAGTAACAATGAACAACCTTGTCATAGCTACATCTATGGTTTTCCATATCCAGCTGCACTGCCTTGTTCACTATGCAGGATGGTACTCTCAGCACTACAATGTCCAGACATCATAATTTCACTACATGTCAACTGGGTTGTCAGTTGTCACATCATGTTTCCCTCTTGAGCTGTACCTTGAGCATTTTGCCACCTATCTGTGAGCCATTCATCCTCCTGATAGCAGCCTGAGCTGATGCTGGTGTGTCATAACTAACAAAGCCGAAACATTTACTGACACCAGTAGCTCTGTCAATGAAAACCTTGGTACTCAAGATCCTACCAAATTCTTGAAATAGATTTGCCAGATCTTCATCACCGTATTCTTGAGGGATGTCATAGACAAATAAATTAGCCCTAGGAGGTCCTTCAATCTTACTCCCTATCTTTGTGTTTGCTGCAGATGAGGCATGATTGCTATGACTGTTTGGTATGTTTACCTTACCATCAGAGAAATACTGTGGTGTATCTCCCACTAAGGCACCTGCATATGATACTGGGTAATGAAGACCTGACAAATCAGGGTAAGGAGGTTGTATGTATCCAGCAGATTGAATCAGGTTCGAAATTTTAGGATCTGTTCCTGGAAATATATTTGTGTTGAGTCCCTGGAGTAAATTTCCTTGATTGACATGTGGGTACATAGTGCTGTACAATGCCAATGGGTTCTTCGTGTGTCCATAATGCCCTGGTACCTCTAACGTTTTGGAATCACACTCATTAGGCTTATATTGCTTCTCGTCATGCTCTACAGGTAAGAGAGAATGCTGAATTGGCTGTATTGGATCATTATATGTAACTCGATTCTCTAATAAGTTCACCACGCTCTTGAGCTCAGTCACTAGCATCTCAAGTTTGTCGTTTGTCATCTTCATTAGATCTTTCAATTCTGGATCCGTTGTTCCTTCAGTCTTGTAATCCAATACATTATATGGAGGAAGAAAGCTCATCTGTGGTGCTCCAGATATTGATAGCAGCTGGGGGAAGAGATAAAATCTTAAGGGCTTAGAAGGTTGAGCCTGAGCTTTCTGTGCCTTTCTAGCTTGCTTTTCCCTTTCAGTGTCAGCCAACTTAACAACCAAAGTCGCACTTGAACCATTGAACACAACACGTGTGCCATTCAAAGCTTCAATGGCCGCTCTAGCATGTTCTTTGCTTCCAAATTCCAGGATAGCACAGGCTGCAGCTTTTCTTGTTTTCTGTGGACTTCTCAGTACCTTCAGTTGTCTAATATTTCCGTACTGCGAAAACAATGCAGAAACTTCATTCTCCTTCACATCCCTTGGAAGCATGCCAATGAAAAGCTTCTGCTCTGCGGCTAATCGTTCCAGCTCGCCGTCCGCGTATTTTACCTGCATTGCCCTGGACGCTCCTGGGAGGGTGCACTTGTTGTGGTACGCGGCGATGGCCTTGTCTGCCTCCTCCCTCGACGAGCACACCACGAAGCAGCAACCGCGGGAGGCGCCGGTGGCGCGGTCGCGGATGACGGTGGCGTCGTCGGCGCGTGCGGCGGCGCGGACCACGGCGAGGATGTCCTCCTCCGCCATGCTGCGTGGCACCTGGCCGACGAACAGCCGCACCCTCTCGCCGCCATCCTCCCCATCTCCGGCCATCGCCGCCGCGATCTGTGTCTCTCTCTCTCACGTTTCTTTCCTTTTCTGATGGCGCCTGTCCGTCCTCTCCTCGTTCTTGCCTGCGCCTTTTTGCTATCTCTGACGACGAGCACTAACCACTGACACCAAGATCTTGATCTCGAGTAGGAGTAAATGTGATCGAATCATCATCTGATTGAGCGAAAAGCAGCAGCATTGAATGAGCAGTTTGGTCGAGATGGAGTGACGTCGCGAGCGATGGTTTGCTTTGATCTTTCTTTCTGGTCTTGCTCGCCTTTTTTTCTTTCTTTTTCTGCTGCAGCCTTTTGCATTGGCAGTTTCTCTCCTTTCATTTGCTTGAGGAGAAGCACAGAGAAGGAAAGAGTGAGGCGAGGAGGAGGAG

Explanation	CPC Score
noncoding	-1.05585

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0392800.2	7	27983766	T	G
Osa07LNT0392800.2	7	27984155	C	A
Osa07LNT0392800.2	7	27984260	T	C
Osa07LNT0392800.2	7	27984707	A	T
Osa07LNT0392800.2	7	27985878	C	T
Osa07LNT0392800.2	7	27986216	C	T
Osa07LNT0392800.2	7	27986253	A	T
Osa07LNT0392800.2	7	27986411	A	G
Osa07LNT0392800.2	7	27987340	A	C
Osa07LNT0392800.2	7	27987672	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0392800.2	osa-miR812t	Cleavage	4.5	15.297	1	24
Osa07LNT0392800.2	osa-miR812u	Cleavage	4.5	15.297	1	24
Osa07LNT0392800.2	osa-miR5832	Translation	4.0	14.629	1	21
Osa07LNT0392800.2	osa-miR1870-3p	Cleavage	5.0	20.114	1	24
Osa07LNT0392800.2	osa-miR2104	Cleavage	4.5	17.898	1	22
Osa07LNT0392800.2	osa-miR2874	Translation	5.0	18.284	1	24
Osa07LNT0392800.2	osa-miR3979-3p	Cleavage	4.5	15.285	1	20
Osa07LNT0392800.2	osa-miR812n-3p	Cleavage	4.5	15.297	1	24
Osa07LNT0392800.2	osa-miR5485	Cleavage	4.5	13.32	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0392800.2	7	S23(t)	Physiological trait	Sterility	R1789	C213
Osa07LNT0392800.2	7	qPLLN7	Physiological trait	Sterility	RM234	RM172
Osa07LNT0392800.2	7	nan	Morphological trait	Seed	RM118	RM248
Osa07LNT0392800.2	7	qDTH-7	Physiological trait	Flowering	S10832	RM1306

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus