>Osa07LNT0393500.4

AGTACCGGTAAAACAGCTCAAAACTTAAATTGCCCAGAACCAAAATATGATTACAAATGGCACGAATCCTGTAGAGGATTCGAGAAGTTTAGAAGTGTTTTCAGCTTTCGCTGCCTTTATGAGGTTCCACAAAATTCGCAGTATTCGGGGCACTTCGTTGCGTCACAAGTATCCTGGGTTATTTCTTTTTCCATGATGCTGTCCCAGGAAAGTGTCAAAGAACGAACACCTTCCTGTCACCTAATCTGATGATCACTTGCTGATTGCAGTTGAACATAGGCAAGGCCACCCGTCATTCCAGCTGCAACGTTCCTCCTTACTCTACCAATTGAGGAATATGCATATGTCAGGACCAGCGTCGGAGCCAAGGCCCGGCGACCCTGAGCAGCTGCCCGGGCTCTGCCGGCTACATGCAACCATGTCCCATTAGATTAAATCTAATTACCTAGCTAATCATATTTAATCACCGTATGAATTGAAACAACAATAGTATATAGTGTACATACTTATAACGATTTAGTGTAAAATAGCAAAGCAAATGCTCACTCTAAAATGATCTACAAATTTGTATAGATTTGTGTATACTATATTTGTTGTTAAACTTGCCTAGGCTCACGATCCGCCACTAGTCAGGACAAAACACTGTGATCCTCATTTAGCAGCATGTCCTACTTACTTCCCCCGTTTCACAACGTAAGTCATTCTAACATTTCCCACAATATATCTAGATTCATTAACATCAATATAAATATGGGAAATACTAAAATGACTTACATTGTGAAACAGGGAGGATTTGCCAACTACACAGCCACCGATCATGTACTCGCAGCAATGATCTCCAGTGCCCTGACCTCAACCACTGATTGACCAAGAGAGTTTCACCTGTTTTGCCTGTCACAAATACCTGCTCACTAGTAGCCAACACAGACAAGCGTTTCCAGCTATAGTAGCTTCGTCAGGAAGTCAGGAACGAATCCTGTGCTATCTAGTACACTCTACAGGAGCTACAACCATCTCTCCACCACCCATGCCCTGCAAATTCTTTCCAACATAATCATTGGCCTCTCTCAACTTGCAGAGTATTCCAGGAGTTAGAAAACATCCAAAAGACTGGCCCTGCACTTCCAGTAAACTTCTTCGCAATGACACCTGCTACTTGACCACAGACAGCCCTCTCAACATTATAATATCTTGGAAACCTCCTCATTCTCAATTACATCAGATATATCAGGATTTGCAAGGATTGTCTCATCAAGAACAGGGCCATTAGTGTGGACATCTTGAACACATCCAGTAGCTATTCATAGCCACAGAACCAAAACCATATTCATCCACGCCCATGACACTAGCCATAAGGACATATTGGCAACTTCTGAATCCACCATCCACCCTACCATCCTCTCTCACAATCAATTTTGCATAAGTGTCAGGAGAAAAGTTAACTAGCATTAGAACAAACAAGATATTTCAATAGGGTAATAACAAACAAATAGATGAGGCTAACCTGGTGTGCTTCTGAAAGACCAAGTTCCCAAGGACCGGCAGAATGCTTAATCAAACTAATTGGCCTAGCTCCAGTGCCACCATCATAATCTGCTTAATGGAACTTGTGGCAGCGTCTCCATTCTGCAGACTTTTGAGATGAGCAAGTATTGGAGAATACTCATCAACAACATCTGCAAGGGGACTCACCACCTTCCCCTGAGTATCCCTCCTGTTCTATTCATTGCAATTGCAATAGCTTCATTTGTTTATCTGGAAATAGCTCCAAGGGAAGGGGAATTCCACATTGACAGGACGGTTTGCAGATGCTGGTACATGGTGTATGCATTATCACCTTTTTTTTTTTCATGAACTGCTTTGCGCGGCAGCTTTGACATCTCAGGATTATTTGCACGATATTCGCCTCCAGGTCTGTATTGGTCCTATTGGATGAACACAAAGTTTGCTAGACTCTTCGCAGAGAACGTCTTCACCCAGAATGATAATATTTCTCTGCCCAGCTAAATAAGAGCAAAGCAGGTCCATCTCAAGCCTCCATGTGACCTTTATAGTAGTCATAAAAGTGGATCGCTTAATGCACAAATCAAGAGAACTTCAGCAGTGCTGTCAAGGTTTGCTGTAGTGTTTCATGCTCAGATGCTTTAGGGTCACCAAATGGGTGTATTCCATGCTCGCACCTGCGCCATACAGGAGACTGTACTGTGGCTTCCCTTGATTGCATCCTGCTCAAGTTCCCACGCGGAGAGGAGCCCGGAGTCCTTCGTCGGCGCACCGGTGGGCAAGGCGCGGTGGTGCCTCACGGCGACCTCGGCGGCTCCGCCGGCCGCCCCCGCGCCCGCCGCCGGCGCCTCCCAGTTGCTGCACACCCATGCCGCGTCCGCGGGTTCTCCAAATT

Explanation	CPC Score
noncoding	-1.25631

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0393500.4	7	28632253	C	T
Osa07LNT0393500.4	7	28631301	T	A
Osa07LNT0393500.4	7	28631658	T	A
Osa07LNT0393500.4	7	28634159	G	A
Osa07LNT0393500.4	7	28634764	G	C
Osa07LNT0393500.4	7	28635277	T	A
Osa07LNT0393500.4	7	28637246	A	G
Osa07LNT0393500.4	7	28637581	A	G
Osa07LNT0393500.4	7	28635390	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0393500.4	osa-miR5790	Cleavage	4.0	19.481	1	24
Osa07LNT0393500.4	osa-miR5795	Translation	4.0	23.759	1	22
Osa07LNT0393500.4	osa-miR812t	Translation	5.0	16.064	1	24
Osa07LNT0393500.4	osa-miR812u	Translation	5.0	16.064	1	24
Osa07LNT0393500.4	osa-miR1438	Translation	3.5	15.343	1	22
Osa07LNT0393500.4	osa-miR1874-3p	Cleavage	5.0	21.748	1	24
Osa07LNT0393500.4	osa-miR2055	Cleavage	5.0	15.828	1	21
Osa07LNT0393500.4	osa-miR812n-3p	Translation	5.0	16.064	1	24
Osa07LNT0393500.4	osa-miR2863c	Cleavage	5.0	17.049	1	24
Osa07LNT0393500.4	osa-miR5837.1	Translation	5.0	8.634	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0393500.4	7	qDTH-7	Physiological trait	Flowering	S10832	RM1306
Osa07LNT0393500.4	7	qPLLN7	Physiological trait	Sterility	RM234	RM172
Osa07LNT0393500.4	7	nan	Morphological trait	Seed	RM118	RM248
Osa07LNT0393500.4	7	S23(t)	Physiological trait	Sterility	R1789	C213

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus