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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0393700.1

CGGAGAAAATTCGCCCAATTTTCTTCCAATCTGCTTCTTAATTCTTATACAAGCAGAGAGATTTGATTTTGAATTTTTTTTACAGGGTATTGATCGATGAGATCTCGTGGTGACGTCATAGGACGTAGACCATGCCGACCTCGAGCAGCGACGCCGGCGGCACGCGCAGCACCACGTCCGGGCCGCGGCAGTTTCGCCGGAGGAAGTTGTACCCGACGCCGACGGCGAGCTTCTTCAGCAGCGACGAGCCCGGCTTGGTCTGCACGTGCGAGTGCCCCAGGATGAACGCCGTGCCGGCCTCCCTCGCCTCGCACAGCTCCTGCAGCTCCTCCACCACGCCCTTCTCCACCTCCGGGCTCGCCGCCTCCACCACGAACCTCACCTTCTTCGTCACCGGCGCCGCCGCCGCCGCCGCCGGGACCTCCACTATCCCGTTCGGGCTGCGCGCGGCGTCCACCGAGGACACGCCGTCGTGGGAGGCCTCGTAGCTGAGGCATCGCCGGAGAGGGTTCGTCCCGATCACCGTGAGCGCGTTCTCGCGCTCGTAGCGGCCGTCGTCGAGCTGCTCGCTCCCGCTGCCGGCGTCGCTGCAGCGGTGGTACAGCGCGTCCAGCTTGATGAAGGTGGCGAGGCTCTCGACGAGCTCCGCCTCGAACGAGTCCACGTCCTGGTGCACGTCGCGGTAGCCGTACCGCACGATGCACCGGTACGACCGGTGCCCCGCCGGGCCGACGCGGCCGACGAGGTAGCGCTCGGCGGGAAGCACGTGCGGTACCGGGACGGACTTGACGCAGACGAACACCAGCACGCGGTGGAACGCCGGGAGGTTGGTGACGAAGCGGGAGAAGTTGGCCGGCACGCCGGAGGTGAGGTCGGTGTAGACGAGGCCGATGCCCGGGACGCGCACCATGCCCAGCTTGTCGCCCAGGGCGAGCAGCCACTCCAGGGTCACCTTGTTGTGCAGGTCGAACTCGTACTTCTTGATGGTGGTGTGGTGCCAGATGAACATGACGGCCATGAGGATGAGCGCCAGCATGATCGGCAGCCACGCCCCCTCCCGGAACTTGATCAGCGACGCCGAGAAGTAGAGCACCTCGATGGAGCCGAAGAAGAGGAAGAAGACGAGTGCCAGCGCCGGACTCCGGTGCCAACACAGCATGATCACCAAGGATGTCAGGCATGTCGTCACCAGCATCACCGTGATCACTGCCAATCCGGATGCATTTCCCATATGCTTGGTATCGCGAAAACCGACAGTCACAGCAATGCAGAGGACCATGAGCAGCCAGTTGATCTCAGGGATGTAAATCTGGCCATGGATATTCTCAGATGTGTGCACCACTTTCACTCTTGGGAAGCAACTGAGTGACTGGCTCTGGTTGATGATGGAGAATGTTCCACTGATGATTGCTTGGCTTCCGACGACCGATGCCAAAATTGCCAGCACAAGCACAGGCCACCTTACACTCTCTGGAACCGATATATAGTAACCAATTTGGTAGGTTGAGTTCAGAGTGTGATGTTTCGATAAATACGCAGCTTGGCCCATGTATCCCAAAATCAGTGCAGGGTATACTAATGTAGTGAAAGCAAGCTGGATTGCACTGTAGGAGAAATGGCCAAGATCAGCAAACATTGCTTCAGATCCTGTCATGCAGAGCAAAATTCCCCCCAGGGACATCCACCCAGACTTCTTAGTCTTCCTCAAGAATTTGAGCATGTAATAGGGATTAAGAGCGCGATAAACTTGAGGGTTCCAGTGGATGATATTGTACAAGCCAAGCATGCTCATGCAAATCAACCAGGCTAGGACTATTGGTGCAAAGAGAAATCCGACACGATGGGTACCGTAATGCTGGAGTGCAAACAGGAACACTAATATGACACATGTTATCGGAATGACGGCATATTCATGCTGATCCCTGGACAAGGAGAGTTCAAGCCCTGAAACCGCTGAGAATACAGATATCGCGGGCGTGAGGACGCCATCCCCGATGACCATACAGGTTCCAATCATCACCATGATCAGCAGAGCAGTCTGCAGAGTCTTGTGCTTCTCAAGCCACTCCTTGATTCGAGACCTGTTAGCCACTTCAGGCGGGTACTCCAGCTTGTACGTGGAGAGCTCCTCGTCGGCGACCTGCCTGTTTGGGAGGAGGCTCACATTGGCGTGCCTGCAGATCAGAGAGTAGAGCGCAAACGTCCCTCCTTCGCCGTTGTCGTCGGCGCGGAGGACGATGGAGACGTACTTGATGAGGGGGATGAGGGTGAGGGTCCAGAAGACGAAGGAGAGGACGCCGAAGATCTCCTCGTTGGACTCCGAGTGGGTGATGTCCTCCGCGAAGGTGCTCTTGTACACGTACAGGGGCGAGATGCTCAGGTCGCCGTACACCACCCCGAGGCTCTGGTACGCCAGCAGCAGCGTCGTCCGCCATGGCTCTCTCACGGCTTAAGCTGGAAAAAGCTCTCTCACCTTTCGAGGCGCCATGCCTCTCCCGAACTCAGGATCCATTGCTCAGCAAGAAACTGATCCTCCTGGGAACAAGCAAGAGCTGACAATGTGAATTGCAGTAGTACTAGGTAATCAATCGAGAGAATCAGCTCTAAGAAGGGGAAAGGGCGAGGAGAGCTGGGAAAAGCAAGGATGCAAATATATCCAAGGTGAAAAGTTGCAGATGGAGCCCCTCAAGATCACTAATTGGAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.477866
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0393700.1 7 28742457 T C
Osa07LNT0393700.1 7 28744454 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0393700.1 osa-miR414 Cleavage 3.5 19.07 1 21
Osa07LNT0393700.1 osa-miR1426 Translation 4.5 24.338 1 21
Osa07LNT0393700.1 osa-miR1851 Cleavage 5.0 19.849 1 21
Osa07LNT0393700.1 osa-miR2878-5p Cleavage 4.5 20.619 1 24
Osa07LNT0393700.1 osa-miR5145 Cleavage 3.5 20.583 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0393700.1 7 S23(t) Physiological trait Sterility R1789 C213
Osa07LNT0393700.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0393700.1 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0393700.1 7 qDTH-7 Physiological trait Flowering S10832 RM1306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus