\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0394000.1

GGAAGGAGCACCCATCTTTCCCCTTTCTCCTTCTCCTCCTCCTACTCCCAGCCGCTCACTCGAACCCCCCCCCCCACCTTCCTTGCCGCCGCTGCCCCGAGGGCGCGGGAGATAACCTCGCCGGAGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCCAGCATCTCCTATTCAGCAGGAAAGAGCAGCATTTTCTTGCTCTGCCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.145563
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0394000.1 osa-miR2919 Cleavage 3.5 13.105 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0394000.1 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0394000.1 7 qDTH-7 Physiological trait Flowering S10832 RM1306
Osa07LNT0394000.1 7 S23(t) Physiological trait Sterility R1789 C213
Osa07LNT0394000.1 7 qPLLN7 Physiological trait Sterility RM234 RM172
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus