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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0394900.2

TGCCCCTGTATCGCTGATTTGTGATGCTAGTTGTAACAAATAAATATATATGGAAGCACAATAGTATGTCAGATCAATGCAATTAAGGGGATTATTTTTTGGCAAACCATGAACTAGATAAAAGCCCACCTCAAAAAAATGAGCTAGATAAAAAGATAATATATTTGCTCTAAAGTTTACGAAACAGACATGTCTTCACATCACATCTTTTTGTAGGTTAAGAGGTGCAGAAGGGATTATGCTGTTGTCTCACTATTCGATTATCACATGATAGAACAATTAGCATAAAAAATAGCCAAACAAGATACTGTTGTTTTAGATATGCAGAAACAAAAAAAAACTCAACCTTGTACCTTTCATCACCTGAACTTAAGGTTTTCACTTCATCAAATTCATCACAGGCAAGTGTATTTCCAACTGCACACGGAATTGGTTTCTCCAAAGCTGTAGCTGCACTTGGAAATATATTAAAATAGAAATTATCAGTCAAGTTGCAGTCTTGGGACTGTGTCGATGCCCTACAGCCAACAGGACATACTTGTGATTGGAGGGAGTAAATGTATCCAACACATGATTCCTGCAGCTTAATGTGTTCTTTTGCTCTGCTCTTATCTTCTACCATTACTACGTCCACGAATTCCACATAGCAACAGTGGCAGCGAGGTTGTATTTCTCTGTTAAGGCATACAAAGTTCTGTCACGCCATGGACTCCAGGGAATAGCCGCCTTAGACTCCTAGCTGTTCCTGAAAATCAAGCATCCCACTCACTTTCATGCTTGTCAGCATTAAGCTTTCACAATTCCTTACATATCTCGTCCAACCTCTGCCTCAGCATTTTGGTATTTAACTCCTGAGGGCTGGTGCTCCTTTGTTATTTTCCTCACATAAGCGAGGAAGCTCATCTTCCTGGTTGGGGATTGAATGAAGAATCTTATTAAGCTTTGCACACGATTCACGCACTTGTGACAATCTCATTCTCACAGCTACACAACTGCTGCATATTCTCTAAATTATTTTTTGCTTAAACGTCAGCAGCAAGCTCTTTGTAAAAAACCTTCCATCCCATCTCTCAAGTCTCAGCTTTGTTGTACTCATTGCCGCATCTTCCTTAATTCTGTGATATTCCTGGAGTTGGTCATCAGCTAAGTGCGGTTTTCTCGATTTTTATTTTGGCCTTGCTCATTCAATTCATTGATAGTTCTTGTGACATCAACCAAAGCATTATGCAAACTTTTCATCTGTTCCAACTGCTTCTTGCTATCATCCTTCTTTTTGTCAATCTCTTTGTTGCAGCTTTTGATTTTGGATTTCAGCCGAGCAATTTACTCTTTCAATCTAAGAAGCTCATGCTGCTGAAGCTAAGTTCGTGCAGCCGCCGGAGGGAACCGCCGTCCGCAGCGGAGAGGGAACGCGAAACCGGCGGCTGCACGGGCATCCCGTCGAAGGTGCCGCCCACGCAAGTGGAGAAGAGGACGGGCGCGCTCCGTTGATCCCCGCTTCCCTCCCGCACTTCCCCTTTCTCTGACGCGGGCGGCGCCGGCACCGGCACCGGCGGCTTCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.864613
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0394900.2 osa-miR5788 Cleavage 5.0 16.274 1 21
Osa07LNT0394900.2 osa-miR5821 Translation 4.0 9.566 1 21
Osa07LNT0394900.2 osa-miR171a Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR395f Cleavage 4.5 15.698 1 21
Osa07LNT0394900.2 osa-miR399a Translation 4.5 16.229 1 21
Osa07LNT0394900.2 osa-miR399b Translation 4.5 16.229 1 21
Osa07LNT0394900.2 osa-miR399c Translation 4.5 16.229 1 21
Osa07LNT0394900.2 osa-miR399d Translation 5.0 16.229 1 21
Osa07LNT0394900.2 osa-miR399j Translation 5.0 16.229 1 21
Osa07LNT0394900.2 osa-miR171b Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR171c-3p Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR171d-3p Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR171e-3p Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR171f-3p Translation 5.0 11.761 1 21
Osa07LNT0394900.2 osa-miR5076 Cleavage 4.0 12.532 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0394900.2 7 nan Morphological trait Seed RM118 RM248
Osa07LNT0394900.2 7 S23(t) Physiological trait Sterility R1789 C213
Osa07LNT0394900.2 7 qPLLN7 Physiological trait Sterility RM234 RM172
Osa07LNT0394900.2 7 nan Resistance or Tolerance Drought tolerance RZ978 RG351
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus