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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0395300.1

TCACATTTGCCGCCCGGAGTTCTGCAGTTTCCACACGACTATTTACACAACCACTTTCCTCTACTATAAACACTTGTGAATCTTAAACTGAATACTGATCCACATTGGGGTACAACTAGCAAGGACGCAGTGTACATCTTCACAAGTGCAACCGAATATTTACAGACCCCCCCATATATAGGGTCAGTTTGGAGCTAGCGCTCATATGGGCTTCCACGCAGTTATGACCTCTTGGAACATTTCCAGCATCAGCTCACGATCTGCGTGCTGGAAGAAGCTATTGATCTCCTCCCTCACATCGTATATCTTCCCAAAAACAAACAGGTAGGTCAGGCACCCTTTCTTCAGCTTTTGCAGCTGGTACAGCCACGCGACGTGAAGCCTCTCGAGGACATTGCTAGAGTTTATATCCTCCAGGAGGCTCTCCTCGCAGCAGTCCTTGATATCAGAAATGCTGTACTTGTTCGCTGCGGCGAGCAGCGAGAGGCGGTGCTTCCAGAACTGGTCTAGCTTTATGGTCCCGTAGATGAAGCCAATCAGAGCAGAGCAAGACTCAAGGCACATGTCATTTATGTTGATTGTGGAGGACTCCTTTTCCTTGAGATCATGGAGGAACATGCTTTCAAACACAGGAGAACATGATGCAAGGATGGCCTTATGGGCCTTGAGGACACCATCAGTCGTATTTATGGTGACGTCTGCATGTATCGACTCCGTGAGCATGCGCGAAAGGCATCCGAGACTGCTCTTACTAGCAATGTTCTGCACCGCTATGCTTTCATTTGGCCAAATCGAGGTAGATGATTCTGCAGCATTGTTAGAGGCTATCTTCAGGTCCAAAAACTCAACATCAATAGTGAAACGCCCAGCGTACATCGTATCAAGTTGCCAGAAAAAGTCTTCGCTGCTTCGGAGGAGATGCTCATGCACAGGGGAGACGCAGGAGCGGCGTGGCGGGCCGGACCAGCAAGCTCGGAGAAGGAAGCGGGCGAGCGGGGGCCGTTCCTTGGCCACCCGCCCGGGCTCCGGGAACAGCCTCACGTATACATATCGAGCCTTCTCCACCGATAGGTACCAGTTCCAGATGCCGATCTTGAAGGAATCGGAGCGGCGGTAGGAGGAGGGGCCGAAGGTGTCGATGCGCCACTGGGCCAGCCGGGAGATGGTCTCCACCCGGTTCTCCCTCTCCATCCCGCCGCCGCCGCCGCCGCCGCGCCGTCTCCTCTCACTCTACTTGTAATAACTCCCGGTAACATAACTCATTAACTTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.863128
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0395300.1 8 201744 A C
Osa08LNT0395300.1 8 202314 G A
Osa08LNT0395300.1 8 202489 T G
Osa08LNT0395300.1 8 202599 A G
Osa08LNT0395300.1 8 203017 A G
Osa08LNT0395300.1 8 203190 G A
Osa08LNT0395300.1 8 203242 G T
Osa08LNT0395300.1 8 203522 C T
Osa08LNT0395300.1 8 202136 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0395300.1 osa-miR319a-5p Cleavage 4.5 20.585 1 21
Osa08LNT0395300.1 osa-miR5488 Cleavage 4.5 22.424 1 21
Osa08LNT0395300.1 osa-miR5150-5p Translation 5.0 18.987 1 24
Osa08LNT0395300.1 osa-miR2099-3p Cleavage 4.5 19.944 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus