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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0396000.1

TCTGTACTTCCATTATATTATTTTTTCTCTTGTCATCTGCCAAAAAACAGGTGTAAGAATCAATTTCAAGGGGAGGATACTCTCTCGAGATATACAATTGGTGGCTGTGGACAACCAAATCTTCAGCAAATATTTTCGACGCCCTATGCTAAGCTTGGACAGGCGGTGAATCTCTACAGGAACAGGTTTCCTTTTGCTGGTGAAAACCAAACCACTGCAATGGGTGGAACATCTAGCAGAAAGAAACCTCTCCGCTTTGACGGCGCAGAAACATACGCTACTTTCTATTGTTTTTCATGGCTGAAATGGGGGCTCCACAACACATTGAATCGCGATCCTGAGCGTTTTTTTCGCCTACGGTCTGCCATTCTGGGTAGTGTACAGAAGCGATTCCGACTGGTCTCTCTCGACGTGATTCTTGCCCTTTCCCATGTCGAGGCGCGCCCTCCGTACAGCTTGTTGGATCTGCCGCTCGTGCTCTCGAAGGATTTCTTCCATGTTTACTCCAGGAGGCATTAATGGTCCTGAGTAGTGGATCCTGCTCTTCTTAGCGCCATTCACCTGCACATACAGGTTTAATTTCTCAGCATATGACAAAAATACAATCCTGCACTTTGGAAGCATTTTTTTCCATTACTATCTTCTGTAAGAAATAGATCGTTGACCTTGATAAATGAGAATGTCTCATAATATTAGGAACAAAGAAAAAACAGTGCACTCCATATCCAGGACACAGGCCATTTGTGATATTTCTCAGGAATAAGAAAGGGCCATTCTGTGAAGAGATTTAGGTAACATGTACTCTACATTCCCTGATAAAAACCATACTCACATGTTCACTGGTCATAACTTCCAAGAATGCTTTTAAGGGTAAATTTCCCAAAGTTTATCTCAGCTTTCAAGGCTTGAATACTATGGATCATTCTCCTGATGGATGTTAGGAGGCAAGACCAAGTGAAGCCAAATAGGACAATAAAATAACTTACCACAGTAGGTTCCTTATTTGCTGCCCCATCATCTTTGCGGTGGGAAGATGATGGTCTTTCTTGGAATTGGTGTGTCCATTCAGGTCTGTCAGAGGGTTCAGCAGCAGCAAGTTGACTATATCTTGAACTAGATCGATGCTCTCTCAAATATTGTCTCCTGGCACTCTCCCCAAGGTTGGAGGACAGCTTAGTGGCATTGCCTCGCTGCCCACCAGTTGCAGTAGACATCTCAGCAGCAGCAATTTGAGATGTGTAAAACCTCTGAGCATTCTGATCAGTGCCACTTGATCGGCCCAGAGTAGAGGATGAACGACCAGCATGCATCAGAGGCGCACGCTGAGGGTAAACATTGTCTCCAGCTCTTCCTGGAGGATCAATTGGGAAGCCAGTGACAGCATCCTCCTTTGGAATAAACTTATTACTGCTGCTTTTTGGATTAAGCTGAACCCGTCGTTGCTGCAATTCGTTGTTGCCATTTGGTGCTGGAAGTTGCTTTCTACGCCCAGCTTCAGATTCATGTCCTTTAACTGCAGCTGCTCTTTGCCTGTG

Coding Potentia
Explanation CPC Score
noncoding -1.1166
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0396000.1 8 663068 A G
Osa08LNT0396000.1 8 663969 C T
Osa08LNT0396000.1 8 662540 T C
Osa08LNT0396000.1 8 662633 A G
Osa08LNT0396000.1 8 663040 T G
Osa08LNT0396000.1 8 664044 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0396000.1 osa-miR5525 Translation 5.0 19.768 1 22
Osa08LNT0396000.1 osa-miR5534b Translation 4.5 13.65 1 21
Osa08LNT0396000.1 osa-miR5512b Cleavage 5.0 13.374 1 21
Osa08LNT0396000.1 osa-miR6254 Cleavage 5.0 18.64 1 21
Osa08LNT0396000.1 osa-miR417 Translation 4.5 10.841 1 21
Osa08LNT0396000.1 osa-miR3981-3p Translation 5.0 15.97 1 21
Osa08LNT0396000.1 osa-miR5160 Cleavage 4.5 18.115 1 22
Osa08LNT0396000.1 osa-miR5512a Cleavage 5.0 13.374 1 21
Osa08LNT0396000.1 osa-miR426 Cleavage 3.0 13.801 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0396000.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0396000.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0396000.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus