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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0396200.1

ATTTAGAAAAATAGCGCCTCAAGTTTGGTTTTAACGATTTAAACAACTTACTCAAACCTGATGCTGAAAATAGTATCACTCTCCTTAAAATCAACGCAAATCACACAGGACAGACCACAGCAAACAATTTAGAGTACAGAATGATTATAATAAACAAAATCTCGATGCACATTACTAGAAGTTTAACGTTCAGAATATTGAATGCATAAGGGTTTTATGGCATTCTCCAGACAAAGGAAAATTAGCAGCTCCTGCTTGTCTCAAGACTCATAATGCGCTACATAAATAAAATCCATTCCTAGAACAAGCTAAGCTTGAAGCAGCAAGGAGCACAGCAGAAGCAGAGCTCTCTCTCTAGGCCACCAGAGTGCTGGCTGTGGTCGACTCATACTTCCAGGTGGGCGGGAGCTTCTTGGTGCGCTTGTAGTAGCGAGCGAGGCGGTGGATCCTGCTCTCAACAAGGATGAGCCTAAACTTGGAGTCCTTGTCCTTCCTGTTCCTCTCCAAATGCTTCCTAATAGCAACAGCCTTCTTGATCAGGAAGTACAGGTCCTCCGGGATCTCCGGCGCAAGACCATGGGCCTTGAGGATGCGGAGGATCTTGCTGCCGGTGACGCTCTTGACGAGGGGGATTCCGTGCTGGTCACGGAGCACCACGCCGATCTGCGACGGCATCTGGCCCTTCTTCGCGGCCTTCATGATCATCTCCTCCACATCGGCGGCGGCGGTCTTGACCCAGCTTGGGGGAGTCCTCTTGTACGGAATCGCCGACGACGAGATGCCCTTCCCGCGGCTGTGCATACGCCCCATGGTGGCAGTGGGGAATTTGGCGACGGCGACCGGCGACGGCGGTTGGCGACTGCGCGGCGGAGGAGGCGGCGGCGGCGGGAAGAGCGAGTAGTGAGCGGGGTGGCGGCGCGAGAGAGAAGGGGTAAGGCTAGGGTTTGGGGTGGCTACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.702314
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0396200.1 8 956897 C T
Osa08LNT0396200.1 8 957596 T A
Osa08LNT0396200.1 8 957190 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0396200.1 osa-miR1440b Cleavage 4.5 12.365 1 21
Osa08LNT0396200.1 osa-miR156c-3p Cleavage 3.5 20.221 1 22
Osa08LNT0396200.1 osa-miR156f-3p Cleavage 4.0 20.221 1 22
Osa08LNT0396200.1 osa-miR156g-3p Cleavage 3.5 20.221 1 22
Osa08LNT0396200.1 osa-miR156h-3p Cleavage 4.0 20.221 1 22
Osa08LNT0396200.1 osa-miR156l-3p Cleavage 4.0 20.221 1 22
Osa08LNT0396200.1 osa-miR444a-3p.1 Cleavage 3.5 17.413 1 21
Osa08LNT0396200.1 osa-miR817 Cleavage 4.0 7.215 1 21
Osa08LNT0396200.1 osa-miR444d.1 Cleavage 3.5 17.413 1 21
Osa08LNT0396200.1 osa-miR2930 Cleavage 4.5 13.551 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0396200.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0396200.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0396200.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus