\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0396600.1

CAGACAGACTAATCATTCAAGTTCTCAAAGAATGGGCACAAGATAGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTTCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACTTCATTTGATAGTGAAACGCATGATGGACTAGTTTCCCACACACATTTGCCAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCCTCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCTAGCTGAAATCCAAGGCCTTCAGGCGTATGAGTTGGACTCGTCTCACCAACCGAGCTGGGAAACTGTTCACCTGATGTAACAGTTCCAAGCATTTCAAGATCTTTCAAAAAGAGGTTCCCTTCATTGATGTCTACAGTTTTCTCCATCTGTTGCAAGGCTTTACGAGCCGCTTCCCTCTCACGTTCTCTTTGGCGTTTAGCTTCTGCAGCAGCCTCAGCAGCTGCTGCTGCCTCAGCTCTCTTGCGAGCATCTTCAGCTGCTTTTGCCTCAGCTTGTATCCGAGCTCTCTCTTCTCTTCGTAACCTTTCAAGCTCCTCCATGTCGTGTTGAAGTTTCTCAGGATCCTTTTTCGCGACCTGATCAAGAGTTTTCTCACGAGCCTTAAAAATTGTATCAGCAAAGCGGTTTAACAAAACAGCAGCTCGGTATTGCTTTGCAGGGGGGACCTGTTTCTCAGACACATTCTCCCCCTCATCTTCGGCAGAAATAGGTACAGGATCACTACTTTGTTGTGGTAGATTGGTCGAGCTCAGTGGATCGTTTTCCTGATCCAACCTAACCGCAGATTGCGTGTTGTCCTTGGCCCCACTTGTTGATGGAGGAACATTGACATCCAGATCGCTTCCAGAAGAGCTACTTGAATCTGAATCACTGGAGGATGATTCTGAATCACTACTAGAACTGCTAGAAGTGCTATGCTTGCTGCTTCTTTCTGCAGTTTCACTTTCAAATACTGCAGGAGGATACGTCAAAGGTGGAAGATCATTCCCACCAATATCAACATCTTCTTCAACGAGCTCATTACCTTCTTCATGATGCATCGATGAGTTGCTAAGCCCATATTCACTTTCAAACTCAACCTCACGATGCTCATCTTTTGTAGGGTTTCCTGACTGATTTACCCTATCATAGTCATCAAGAAGCTTCTGAAGTTCAAACAATGTACTATCACTTAGGACATTCATGTCAAGCTCTAACTCATCTTCATCACCCTCATTATCATCAGGAAGGTGGCTCCTTATGAAATCAACTACATGATTTGGAATCAACCCACCATATGATTGAAGTCTTACGCTTAGCTCATACTTTTGTCTGTCCGTCATAATCTCCTTAGAAGCCTGTACCACTTGAGCATCATCAATCACCTTAAAAGCCTGCACCACTTGGGCATCATCAATCACCTTAGAAGGCTGTACCACTTGAGCATCATCAATGACCTTATCAGCTTCTACTACAGGTATTTCAAGAGAACCCTGAACCAAGGGAGAAGCTTTTCTCTTCTTTGGTTGCAAAGCTGGCTTAGTTGAAGCATCCTCTTTTTTAAACATATCTTTCTTGTGTACACCTTTTGTCGAGTGCTTTTTCTCAGAAGGGTAATCTTTCTCAATGGTATCTTTCTTAACTGCACCCTTTTGTGATGGCTCTCTTCTCACAGAGAATTTATCATCTAGTGAAGGAAGCTTCTTTTCGATAAACTTCCATCTAGTTTCAAAAATACATTTCAAAGTTTTGCCCATTAAATTCACGTCATTACCGACTGGGTTATAAGTCACGGCATTGTCAAAAGTAAGCCTCACATCTGCAGCAAAATCCCAAGGTGTAGAGTACATGCCTGCATTCAACTTTTTCTCGATGGTACCCAAATCCATTGGCTTCTTGATTATGTCAAAATAATCAGGAATGTTCAACTGTACAACATCAACCGGCGCAAGGAACGGACCAGCCCACTGATGCTTGAAGAGGTTCTTCAGAAGGTTGCCACATTGTTTAAAAGCTTCTGCGTAGTTTGCAGACCTGACCACAGGTGTGGCTGCTGATGGTGGCACTCCTCTGCCAGACTGCACTGAATTGCTCCGTTTAAGCTTCGCATCGTTTCTCTTTGCAACTACGTCTCCAGAAGCTGACGCCGCCCCGCCATTCATGCTCACCGCAGCCGGCCTCAAAAACAGCCTACTCTGTAGGGCCTTAACCTGCTCAAGCTCCTTGCGGAGCCTCATCTCGAGGTCCTTTTTATCCGAAGGCGACATCCTCGGCAGCATGAAGACGTCCCGCGGCACATTGAACCCCGGAAGCTCCCCTCCATCCTCTGTCTTCAGGATTCCGCATTTCCTCTTCGGCACAGCACACGAGCTCCCCGATACGATCCGCTCCGGGCTCCCGATACAGCCCTTCGACTCCCCCACCGTCTCCACGCCGTGCCGGTAATCCGGCACGAAGCCGAGCGGGTGCCCCTTGGAGAACTTCTGCGTCTTCCCCATCATTGCGCGCAAACCCCCCTCACGCGTCAGGCCGGACCAAAGAAAATCCACCCGCAATTCCTCAAAAACCTAACCCTAACCCCTCAAGGAGGGGGAGGAGGCCCAGCTTATTATTCCACGGCCGCCACGGATGAGGGGCGGCCCCTTACAAAACCCTCGAATCCGGGGGGCGAAGCAGCTCGATTGGCACCACCACCCGCGGCGAGAGATCGAGCGAGCGAGCGAGCGAACGAACGAACTCACCGACCGCCTCCGCCTCCGCCGCCGCCGCCGCCCCCACACCCCCACACCCGGCGGCGCCGCCGCGAGATCTCGAGGCCTTCCCACGCGCACCCCCCCGGGCGCCGGCGCCGCCCGCGAAACCCTAGAGCTCTCCCCCTCCTCGAGCGGGGGGAGGCGTAGG

Coding Potentia
Explanation CPC Score
noncoding -1.02576
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0396600.1 8 1572178 C G
Osa08LNT0396600.1 8 1570884 T C
Osa08LNT0396600.1 8 1568196 T C
Osa08LNT0396600.1 8 1568542 T C
Osa08LNT0396600.1 8 1569468 T C
Osa08LNT0396600.1 8 1569471 A G
Osa08LNT0396600.1 8 1569306 C T
Osa08LNT0396600.1 8 1569975 T C
Osa08LNT0396600.1 8 1570407 G A
Osa08LNT0396600.1 8 1571174 G A
Osa08LNT0396600.1 8 1571310 A G
Osa08LNT0396600.1 8 1572200 C T
Osa08LNT0396600.1 8 1572364 T G
Osa08LNT0396600.1 8 1572816 T C
Osa08LNT0396600.1 8 1573254 A G
Osa08LNT0396600.1 8 1573607 T C
Osa08LNT0396600.1 8 1573627 A G
Osa08LNT0396600.1 8 1573653 T C
Osa08LNT0396600.1 8 1574202 A G
Osa08LNT0396600.1 8 1568917 C T
Osa08LNT0396600.1 8 1571162 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0396600.1 osa-miR159a.1 Cleavage 3.5 20.888 1 21
Osa08LNT0396600.1 osa-miR159a.1 Translation 5.0 17.404 1 21
Osa08LNT0396600.1 osa-miR159b Cleavage 3.5 20.888 1 21
Osa08LNT0396600.1 osa-miR159b Translation 5.0 17.404 1 21
Osa08LNT0396600.1 osa-miR1849 Translation 5.0 14.104 1 21
Osa08LNT0396600.1 osa-miR2868 Cleavage 4.0 20.303 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0396600.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0396600.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0396600.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus