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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0396800.2

GCGTTCATTAGCAAAAACTAAATTTGAAAGTATATTAGCTAGGATGTAACTACATCTAGCATGTGAAATACAGTTATCAGCTAAAACTGACTTGGAGTAAAATGTACCCCAAGAAATACAGTTTGGCGGAAGCTAAAAATTACAGTGCAAGTCATGCGATAAACTGTTATCACGGATGTGGAATGTTGTTCAGCGTGACAACATTTCGGAATCTTCGAGCAAACAAATGCATATGTTTGTTACAACCAGGTTAGTCGAAAGAAACATGAAACAGAGAACGAAGGCGCGTAAAATGCAGCTTCAGCCAGGCAATGCTTCACCTTCACTGCTCAGTCGAATGATATATTCAGATTTTCATACGGATGGATGCCTGCCTGGACGGCGGATCCCTTGGTGGCGGTCGCCGCGTTCTGTGCCGCCTGCGCCACCTGCTCACCAGTCTCGCCCTCGGCGTGTGCCTTCCCGGACTCGAAGGATCGCTGGATGTTGCTCCACACGCCTGCTGCCGATAGATGATTTGTTGATTGATTACTTTCTTTCTGCTAGCAGTGTAAATCTAGACGAAAAAC

Coding Potentia
Explanation CPC Score
noncoding -1.04796
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0396800.2 8 1623616 G A
Osa08LNT0396800.2 8 1623396 T C
Osa08LNT0396800.2 8 1622092 G A
Osa08LNT0396800.2 8 1622293 C T
Osa08LNT0396800.2 8 1622443 A C
Osa08LNT0396800.2 8 1622449 A G
Osa08LNT0396800.2 8 1622452 C T
Osa08LNT0396800.2 8 1622455 T C
Osa08LNT0396800.2 8 1622456 T C
Osa08LNT0396800.2 8 1622505 G A
Osa08LNT0396800.2 8 1622524 T C
Osa08LNT0396800.2 8 1622534 T C
Osa08LNT0396800.2 8 1622535 A G
Osa08LNT0396800.2 8 1623123 A C
Osa08LNT0396800.2 8 1623220 G C
Osa08LNT0396800.2 8 1623407 T C
Osa08LNT0396800.2 8 1623434 T C
Osa08LNT0396800.2 8 1623644 T G
Osa08LNT0396800.2 8 1623688 T C
Osa08LNT0396800.2 8 1623178 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0396800.2 osa-miR166a-5p Cleavage 5.0 17.757 1 21
Osa08LNT0396800.2 osa-miR166a-5p Cleavage 4.0 21.715 1 21
Osa08LNT0396800.2 osa-miR166d-5p Cleavage 5.0 17.757 1 21
Osa08LNT0396800.2 osa-miR166d-5p Cleavage 4.0 21.715 1 21
Osa08LNT0396800.2 osa-miR166e-5p Cleavage 5.0 17.757 1 21
Osa08LNT0396800.2 osa-miR166e-5p Cleavage 4.0 21.715 1 21
Osa08LNT0396800.2 osa-miR166l-5p Cleavage 5.0 17.757 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0396800.2 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0396800.2 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0396800.2 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0396800.2 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus