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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0397100.1

GCCGCATTCTGCATCGCACCATTGGATTGGATGCTTTCTGCACGCAGCATAGGAGTCCATATGCTTCCAGACAACTTGCTATCACGCATCCAGGGTGAATTGTGTGGGGCTGTGGGCAAATTCAGTACATAACCTGCTCGTGGCAAATTGAGGACTAAGATTTTGATTTTGAGCACCATCGGTGCCTTTTTGGTGTGGGCTATCAAGACCATCGACAGCTTCCTCCCTTGTCCCCACCGGCCATCCGCTTTGCAACGTGATAGATATTTTCCTTGTATTATGACGTTCATGAATAATGTAGTCATGCCATATGAAGCAGTTGTGTAGTATGTGACCTTTTTGGCGGTTGATTGAAAAGTAAACTGATTGGATCTGGGTGACTGAATAAAGTGCTTTAGTATTCAGCTTGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.312611
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0397100.1 osa-miR417 Cleavage 4.5 19.814 1 21
Osa08LNT0397100.1 osa-miR814a Cleavage 4.0 12.507 1 22
Osa08LNT0397100.1 osa-miR814b Cleavage 4.0 12.507 1 22
Osa08LNT0397100.1 osa-miR814c Cleavage 4.0 12.507 1 22
Osa08LNT0397100.1 osa-miR5144-5p Cleavage 5.0 22.795 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0397100.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0397100.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
Osa08LNT0397100.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0397100.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus