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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0397500.1

CCCAACTATAATAAATAAACATGAAGTTATGCTCAAATTATTTCAGATTAAACGAACCAGCTTGAAACTATTCAAGTTACTGTAAATTACAGTGCTAGGTTTAATTCCTAATCCAACAAGTACTACTGGAATATTGTTGAGCATCAGCTAACTTGATACTAAAACTGAGTCTACATGTAGCATCGGCAGCTGGCATTCACATCTCCACCTTCATCTGTTCATGACTCCAAAATGGGTTCCGTTACATTGATAACTATTACTCTGGCTTCTTCAAGTTTATACAATGATCTGTAGCTTCATTAAAAAGAGCCTCAACTTGCTTCAGCTCCAGCTCAGCAGCTTCCAGTTGTTTCTGAAGCTCTGTGCCTACAACTTCATTCTCTGCCTGTAGCTCTTTAATTCTTTTCAGCTGATCCTCTTCAGATGATAGTGGCAACGCAGAAACAAGAGCATCAAACTTCTTGGCGGCGAGGACGAGCGCGTGGCTCATGGCCTTGGGATGCTCGGCGAGGTCGAGCGCGGGCGGCTGGGCCTGCGCCGGCGGAGCCTGTGCCTGCGCAGCCGGAGCTCCCGCCGCCGCCGCCGCCGCCGCTCCAGGCTGCGGCTGGGCGGGGTCGTCGGGGTTAGGGTTTGCTGCTGCGGCGGCGGCGGGGTTGAGCGGGTCCGGGTAGTTGTTGGAGAGGCGGACCGGCGGCGCGTCCCGCTGCAGCGTCCCGAAGGTGTTCACCGCCACCATCGCCATCTCGTTCAGCTGCTCCTGCAGCTGCGAGATGATGTCCATCTCCGGCGATCTCGTCCCCCTCCTCGCCGCCGGCGACCTCCTCCTCCTCCTCTTCTCCCTCTCCTTCTCTCTCCTCCTCCTCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.905766
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0397500.1 8 2013268 A T
Osa08LNT0397500.1 8 2013408 A G
Osa08LNT0397500.1 8 2014052 A G
Osa08LNT0397500.1 8 2014547 A C
Osa08LNT0397500.1 8 2014557 T A
Osa08LNT0397500.1 8 2014660 C T
Osa08LNT0397500.1 8 2015192 G A
Osa08LNT0397500.1 8 2015455 C T
Osa08LNT0397500.1 8 2014165 A G
Osa08LNT0397500.1 8 2014081 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0397500.1 osa-miR5081 Translation 5.0 20.145 1 22
Osa08LNT0397500.1 osa-miR5081 Translation 5.0 12.499 1 22
Osa08LNT0397500.1 osa-miR5338 Cleavage 3.5 10.309 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0397500.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0397500.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0397500.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0397500.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus