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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0398100.1

CCCCAATAAGGTTTACACAGAAATCTTAGGAACAACATACCAACTAGAGAGCAATAAGGGAAGATAGTAGCTTAGCTCTCTTTTAAACCAGGTTTGCATGCATATTGTCTAAGACAATTCAACATAACATGAATAATTAAACAGCTAAAGTTTAGTTCTAATTAAATAGGTGGCTTAATTAAGAGGCTTCCTGGTAAGCTCTAAGGAGCTGGCAGGCTTCCCTGACATATACCCTCTGGCCTCGTGTCACAAACAAAACTCCCCGAGATCATTAAGAACTTAAGTCGTCGATCTAGTCATCCTCCGCCTCGTCATTAGAGTCCGGCGGGCAGATAATTGTTCAATGCAGTGGTTACGAAGCGTCTGACATCATCCAAACTAATACAGTATCCAAACTTGGTTTGTTTGATTATCGCATGATAGACAACAACACAATTAGAATCTCCATTCAGTATTGGGCTTCCAGAAAACCCATCAGAGCAATCGAACTGAGGAACCTCCATAAGCCGCATGTCATATCCTTTGACGTTCGATCTTGTCAGAACATCATAAGTTCTATTGTTATGACTTGCATTGCCCCAGACAGATGAGTTCACTCGGTGTGGCGGCCAACCATGCATGAGGACAAGCTCATCTTTCGCAGGAGGCGAAAGAGACATTGTGATAACAGGGTGATCAAATGGGCATGCAACAAACTGATCATCATCCACATCATGCAAGCGTAGCTGGTCCACTTCTGCTTCAAGAAGGAGCAAATCCTTCTGAGTATCAATTGCAATGACCGACGCAGCAGAATATGATCTCACCAATTCTGAAACTTTCATATCAGGTTGAGTAGACTTAAGATACTCCTCATGGTGAGTGCATATGATACTAAAAGAGAATGCCACATTGAGGTCTAGTATACTAATTTGATGTACCCCTTTCTGATAAACACTGTCAACCGCATGCGCAGTAGTTAGTATGTAGATAAAGTTGTCGTGTCTGTGAACGAGGAATCCCGTCTGTTGCCTTCCTCCAAACTCCGGTACGTCCGTTCTCTTATTCGTTGCAACCTTTGTCTTCTTCGGTACTTTTATCTTGTCCCTTTTGTCCTCTGGCAACAATGCTTTTGTCATTTCCACGTATTTAACCAGAGACTCATAGTTGTCCTCGTCTTCATAACGCACAACCACCTCAACACTGAAAATTGAGGGGGCAGTTGCAGTAGAAATCCAACTTTGATTCACATTGACGCTGCTGGTAAGGAGATTGGGTCGACGAGGCCCGTTGTTATTGTTCAGATCAGCCATTTGCGATCGATCGATGAAGAGCGAGCAAGCTAGCCAAGAACAACGACCAGAGAGACTCTCTCTCTCTCTCTCTCTCTCTTTCTACGAGAAAGCAAGAAGAGGAGCAGCTGAGTTGAAGAGAAACTTTTGCGCCTACCTCTCTA

Coding Potentia
Explanation CPC Score
noncoding -1.28763
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0398100.1 osa-miR444a-3p.2 Translation 4.5 18.493 1 21
Osa08LNT0398100.1 osa-miR444d.2 Translation 4.5 18.493 1 21
Osa08LNT0398100.1 osa-miR444e Translation 4.5 18.493 1 21
Osa08LNT0398100.1 osa-miR444f Translation 5.0 18.493 1 21
Osa08LNT0398100.1 osa-miR2905 Cleavage 5.0 12.02 1 21
Osa08LNT0398100.1 osa-miR5074 Translation 4.5 19.612 1 21
Osa08LNT0398100.1 osa-miR5508 Cleavage 4.5 19.938 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0398100.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0398100.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0398100.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
Osa08LNT0398100.1 8 cl8.1 Morphological trait Dwarf RG20 RG885
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus