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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0398500.1

GCCAGATGATTCCATTGTTTTGGGGGCTTCTCATACAGCACCCCTAATAAAACCTCCCAAACCTTGCCAGGAATTAATCAAGACGCACAAGTGCATCCAAATTCGCCAAACGCTGAATTAAATCGAACTTTTACAGATCAAGTACGCAGTTGCAATAGACAAGTCACAAGTATCGTCACCAAAAGGAGAAAGAACAGTTGAACAAATCTTCCAACAACATCCAGGCACTGGAATCTCTAACCCAGCCAGATAGACACCTCAGGCCTCAGCCACCAAAATCCAGACCACCATGCTAAACCGGGGTGGGCTTGATTTTAATTGCAGGGAGAGGGCTAATATTCGCAATCAAGATCCTCACAATGATGTGCACTCTTTCATCACCCTGTGGGTAGAATATTGTGATCTTCCTGAGTTTTACACAATTGAACATTTCTTCTATTTCTCTGCAAGTAGGATCAATTGCTGCAGCAGCATCTGGGTAATCCTCATAGTCATCAGATCCATACTTGTTAAGTTGCAGGTGAAGTTTTTCTATGTTAGGTGAGCGCCGAAGCAAGAAAAGTAGAGGATAGCAACCATCTCTCAAAAACCACTCACCTAGCTTCAAATATTTCAGGTTGCTGAATGTCTTACACCTTGGAAAACTACGGATTAACACATTTGGCACCACATCTTCATAGGCAGTTGGAGAAACCAATTCCAAGCTTGTGACATTGGAAAGAGCAGGGATAATATTGCAGTCAACAGCAGAATTTTGGAAAGAGAGTTCAAAAAAGTAAAATGTGGCCCTTTTCACTGATGACACGTCCACGAGCTGAATATTTCTGTTTGGAATCTCATCTAGATGCAGGGTAACTAGGTTTGGCATATCTATCATAAGATGCTCAAATTTTGGGGGGGAAATGCTCTGTGGTCTCTGTAGAGTTAATGAGCAAATTCTTCAATGTGGTGGAGGAAAACATGGTGACAATGATGGCACAGTTTTTCAACTCCAGATCCTCTAAGACCGGGCAACAAGAAGAGAGCTTCTTGACAAAACTGTCATCTATAATGAAATGGCAAAGGTGCAAGATAGACAAGTAGACCGAGGTGAACGGAAAGGGATAACCATCAATTGAAAGAAGATTGGTGCCACAATGCTCCATAATGCCAAGAGCCCAGGCATTGCTCCTAAGGGCATGACGAATCCATGGATGGATGTCAGAATAATCAAGGGAATCATCAGAGTGGTTGCAGGTGGCAAGAATAAAAAGTGCATCCAGTGGCACAGGTCTGCGGTACGGGAGCAAATTGTCAACAAACTTCTTGAAACTTTTCATGCTGCTGAACTTTGCTGCATCAGCTTTGAGCCACTTTGTAGATGACCAGACATTCTGCCACCTCCGCGATAGCACGCATGTCTGCACTGCCTCTTGCGCGGTTAAATAGAGCATGACAAAGCGTAGCAGCCCGTCTGGTAGTCTGCTAATCCTGTCAGGCGCATTCTCCTCATTGATAGAGGTGGTCATCCCTGTCGCTGGAAGAACTTGCTCTATCAGGGACATTGAATCGAGCAGCTTCCGTGCAAGGTGTTGTCTCAAATAGCCCGTGTAGTCGCGCATGCAGGCCCAGCCTTGGTCGCGGCTCGCCGGCGTTCCGCCGCCGGCGGGGGCCTCCGGGTGTCGCCGCCGGTGGCCGGAGAGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.03897
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0398500.1 8 2813236 G C
Osa08LNT0398500.1 8 2813341 A C
Osa08LNT0398500.1 8 2813411 A C
Osa08LNT0398500.1 8 2813629 A G
Osa08LNT0398500.1 8 2813764 G A
Osa08LNT0398500.1 8 2814156 G A
Osa08LNT0398500.1 8 2814967 G A
Osa08LNT0398500.1 8 2815039 G A
Osa08LNT0398500.1 8 2815131 C T
Osa08LNT0398500.1 8 2815749 G A
Osa08LNT0398500.1 8 2815850 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0398500.1 osa-miR5825 Translation 5.0 22.068 1 24
Osa08LNT0398500.1 osa-miR1440b Cleavage 4.0 11.05 1 21
Osa08LNT0398500.1 osa-miR2090 Cleavage 4.0 12.503 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0398500.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0398500.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0398500.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
Osa08LNT0398500.1 8 cl8.1 Morphological trait Dwarf RG20 RG885
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus