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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0399000.1

GGGGGATACCGCGTCCAAAACTATCGAAGAAAAAAGAAAAGATTCCCCTCCTCTGCTTCTCGTGTTCTCTTCTTCCTCCCGTCTCTACTCCTATTCTATCGGATCTCCGGCGAGCAGCGCCGCCGGCGATCGGGGTCGTAACATGGCCTTGTCGCCGGAGCCCATGTTCACGGCGGCGGCCGGCGGCGAGCGCGAGGAAGCCCTAGACGCGGCGGATGTGTTGGGGTTTGGGTGAGCGCAATTACCATGGGTTTTTTTTCTTCTTTTTTCTTGGCTTTGTTTATTGCTAGATTAGCCTTTCATGCCATTTTCAAAATTGAAACAAATCATAGCGTTGGAATATAAAGTGAATTGTCTGTATTTCTCCATCAACTTAAGCTTTTGGGTTGAACTGATCAGTGCATGTAACTCAATAGATAGTACTCCTATGTTATTGTGTGATAAGGAAATGTATAAAAGAGGAGGAGATAGAGTTTGGTTGAAACAAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.922914
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0399000.1 8 3117870 T C
Osa08LNT0399000.1 8 3118162 A G
Osa08LNT0399000.1 8 3118238 A T
Osa08LNT0399000.1 8 3118202 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0399000.1 osa-miR5538 Translation 4.5 13.856 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0399000.1 8 cl8.1 Morphological trait Dwarf RG20 RG885
Osa08LNT0399000.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0399000.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0399000.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus