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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0399500.1

GCATAAATATTATCATAGGTTTATGTATATAATATGTCAATCTTGTTCGGTCATACAGACGATTCGACGAATTTTGAGCACTAGGTATTTAGCAAAACTCTCATTTATTCCGCAGGCTCTCTCCATATCCAAGGAAGGAAGGTGGAAATTGGGGGGAAAGGGAGATAAAAAAGGAAGAAAAAAAATGCTTCAGGGAAGAACTCTATACATGTGCACTCAAAGCATCGGTTTGAGAAGCTCTTTTCTGAATATTTATGGCACTTCAGCAGTTCAGCTGCTGGGCTTCTGGTCTGTACCAGGTGAGGCCCCAACTGATGTCACAAAATTGCAGACTGCGCATTTGACAGACCTTGCGCCATACTGGTACATGAGCAGCATACGGCAGTTCCCGCAGTTTACATGCGCAACTTGATTTGCTTCCATAGCCAGGTTGACAGTGTGACAGCAAGAACATTGCACACTCGTCGCACCGCGTATATACATCAGGAGAGTGTGGCATCCTCCGCAAACTAACTGCGCCATCTCGGTTCCAGGAGCAGGCACAGCAGTCACGGTACTGCAAACTGCGCAGCAAACCGACGTTGCTCCGGCTGGATACATGAGCAGATTACGGCACCCAGAGCACACGAGCTGGCTTTGAGCCCCATTGGGAGGTGTAAATGGCACAGGCGGGGTTGGGTATGGAGCAAGGGGAACCGGCATTGCCGTGCCGGCTGCCTGAACGACGGCGTCGCTTGTAGATGCTTCGCAGATTCTGGCAGCAGTCAGGCAACTGAAATCACCTTTCCTTTCCCTACATGAAAGAAACCCTAACAACAGTGCTTATGACCCAATCTTTATGGTAATCTGGCTTGCATGAGAGCAGTTCATCAGTTAGTACAGCTCTCTCTATCTCCTCTCTCTTAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.942522
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0399500.1 8 3460831 C A
Osa08LNT0399500.1 8 3461415 A G
Osa08LNT0399500.1 8 3461515 A G
Osa08LNT0399500.1 8 3461623 A C
Osa08LNT0399500.1 8 3461757 A G
Osa08LNT0399500.1 8 3461798 T C
Osa08LNT0399500.1 8 3461895 A G
Osa08LNT0399500.1 8 3461711 T C
Osa08LNT0399500.1 8 3461892 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0399500.1 osa-miR1847.1 Cleavage 5.0 17.595 1 21
Osa08LNT0399500.1 osa-miR1847.1 Cleavage 4.5 22.255 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0399500.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0399500.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0399500.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0399500.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
Osa08LNT0399500.1 8 cl8.1 Morphological trait Dwarf RG20 RG885
Osa08LNT0399500.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus