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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0399900.1

AACAAGCCTAGCTATCATTATGCCAAAGAGTAATATCAACCGAACACCCCCAACATCACATGGTCCTATCTCTGGAGCTGGTAAACACCAGCATGACAACACGGCAGATAAGAATATCTCGAAAAACACATACAAGCGCGGGAAAACTAAAAAGGGCCAACTTGGTGTTAAAAAGAAAATAAATAAAACAAAAAACAATTTACAAGTTGTATTCTTTTATCTATCGTCCAGCGAGCTTCGCAGCCTTCGATGGACCCTCTAGTAGCTTTGGAACCTCTGATGAGGCTTCTAATTTTTTCAAACCATCTTCACAGTAGTTACTAATATCAAAGTTGGTCACAGCATGGGCACCACGAAGCTCGATGGCAGCTAGGTCATAAGCTTCAGCTGCCTCTATCTCCGTTTCAAAGGTACCAAGATAGATGTCTTTGGTGTCTCTACTTTCTCCAATCCTACCAATCCGTGCTTGCCATCTACCATCCTTTCGCCTTGTTACACCCCTATATGATGAAGTTCCTCTTGAGAAACAGCTGCTCTGCCTTCTTATGTACACCACAAATTCATCTTGGGACATGGTCTTCATCCTCTCGATTTCTTTCTCATAATCAGAAACATTGAAGTTAAGTTTGGTGTTTGGCCCTGCACCCCAATATTTAAGGGCTGCAAGGTCATGTGCCCTTGCAGCATTCTCTTCAGTAACATAGTTGCCTAGGTACACATGCTTCCCCTTGCGCTTGCGGCCCTCGACCTGGCTGCTGTTGTCCCAGAGGTGCGCCTCGAACTTGCCGCTCCACTTCAACCTCGTGACGCCGTGGTACCGCGACGACCGCGGCGCGGCGTACTTGCGCATGGTCTCCGCCACCAGCTTCCCTCCTCCTCCTCCTCCTCCTCCCTCCGCCGCCGCAGCCGCTTTCCCATCATCCCCGCCGCCGTCCGCGACGGCCAGCTGCTCGTCGAGCGCCGCGATCTCCTCGCCCCCCGCCGCGGCCGGCTGCTCCTCCGTCTCCGGAGGAGGAGGAGGCGCGGGGTCCGAGGCGGCGGGTTGCACGGTGGCCATCGCCGCGAGGTGAATCTTCTTCTTCTTGGATTTCTCCTCGGCGAAATCTTCGAGAGCTCGTCGCGGCGCAAACCCTAGAAGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.889445
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0399900.1 8 4176324 A C
Osa08LNT0399900.1 8 4176527 G A
Osa08LNT0399900.1 8 4177562 A G
Osa08LNT0399900.1 8 4177672 T G
Osa08LNT0399900.1 8 4177700 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0399900.1 osa-miR1853-3p Translation 5.0 9.703 1 22
Osa08LNT0399900.1 osa-miR2094-5p Cleavage 5.0 19.58 1 21
Osa08LNT0399900.1 osa-miR2907a Translation 5.0 21.794 1 22
Osa08LNT0399900.1 osa-miR2907b Translation 5.0 21.794 1 22
Osa08LNT0399900.1 osa-miR2907c Translation 5.0 21.794 1 22
Osa08LNT0399900.1 osa-miR2907d Translation 5.0 21.794 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0399900.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0399900.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0399900.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
Osa08LNT0399900.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0399900.1 8 nan Morphological trait Panicle/flower RG333 RZ562
Osa08LNT0399900.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0399900.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0399900.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus