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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0400000.1

CGATAATTAAACGCGAGAGAGAAGAAAGCAAAAGCAAGCAACTTAATTAATTAATATAATTTTCTCCGTACTCCACTAGATTGTGTGTGCAATGAGGTGTTGGGCACCACCATTAAACCCGATTTATGCAATGACCTCCTCACAACCTAATCACCCACTAAGAGCACAAGATTAGTGCTTAATCAGATGATTAAATTTAAGCTAAGCCATCTCTGACGTAGGGAGTCGAGGTGGCTCGCCTGCTCCTCACGAATCTCGAGGCCGTCAAGAGGGCTGCACGAATCACGACGCGCCCTTCGTCTTGCTTTGCATGGCGCGCGCGATGGCGGTGGCGATGGATTGATCGGTGCATCGCCGGCGAGCCGGCGAGTAGGTGGTGGTGGTGGTCATAGCCTGACGAAGAAGATGGCGAGCTCCGGGCCGGTGCCGCCGCCCTGGGGCGCGATCATGTAGAGCGACTCGGAGTCGCGCGAGCCGACGAAGTGGTCGAAGCAGCCGCGCATGTAGGCCACCTCGTCGTCCGCCGCCGCCGCCCCCTTCTCCGGCGACTGAGACGACGACGACGACGACCTGTTGGAGGCGGGGAGCACGCCGGCGCCCATGGAGACGGGGCGCAGCGTCTCCAGCACCGCGAGGTCGTCGTCCGTCGCCTCCCGCCGCACCGCGAGCCCGGTCTTCCTCCCGTTGCAGAACATGGTCCACGCCGCCACGTCCAGCAGCGGCGGCGCCCTCCGGTGCTTGCCGGCGGCGGCGTCCGTGGATGGCGCGCGGCGCTCGGTCTCCAGGACGATGCGCGCGCCGGCGGGGTTGGCGAGCTCCCGGAGCAGCGCGTTCGTCTGGATCGCGAGCTCGATGACGAGGGTGGGCAGGCAGCGCGGCGTCTCCTGCAGCGCCAGCGCGACGCGCGACATCAGGTGCGAGTCGGCTGCTCCTCCTCCTCCTCCGCCGGACGCCGCCGCCGCGGCGACCTCGCTCGCCGAGCCGACCTGCATCCGGCCGCACCGCGGCGCCAGCGTCAGCAGCGGGAGCGAGCGGCGCAGCTTCTGGAACAGCCTCGCCGACCGGGAAGGGTACCGGTAGTGCTTCCGCGACGGCAGCTCCAGCGTCGACCCGGCCGGCGGAGGCCGGCCACGGCCGCCGTCGTCGAGCGACGACGACGACGACGACAGAGACGAGGCCGTCCGCGCGCTAACGCTGCTGGTCCCGTCCATGGCGGCGGTGGGGACGACGACGGGGTGGGGAGCGAAGCCGCCCATGCGCGCGAGGGCCGTGGGCGGCCGGCCGGCGTCGGGGAACGTTGCGGCGCC

Coding Potentia
Explanation CPC Score
noncoding -1.08007
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0400000.1 8 4211671 T C
Osa08LNT0400000.1 8 4211960 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0400000.1 osa-miR814a Translation 5.0 20.11 1 22
Osa08LNT0400000.1 osa-miR814b Translation 5.0 20.11 1 22
Osa08LNT0400000.1 osa-miR814c Translation 5.0 20.11 1 22
Osa08LNT0400000.1 osa-miR1848 Translation 5.0 21.731 1 21
Osa08LNT0400000.1 osa-miR2925 Translation 3.0 23.235 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0400000.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0400000.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0400000.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0400000.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
Osa08LNT0400000.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0400000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0400000.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
Osa08LNT0400000.1 8 nan Morphological trait Panicle/flower RG333 RZ562
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus