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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0400600.1

GACAAGATCGTATAAGATACAATTCAGTTCCTCATAAATTAACAGCAAAATTCAGCATGGACTTGTAAATTCACCTCAACACTACATTCTGAAACATAAGATGAAAAACATTTCGGAAACATCAGATGAAAAACATTTCGTGTAGCACCAATTGATCGATCACACCAACATCCATTATTGCTAAACCGCAGATGAAGGAACTGATAATCTGAGATAGCATCTGATATTATTGCTTCATTAACATATATAGGACAAGATCTTGTACAAGTGGCGTTGGATCTGACCCATAGTTTGACATGTCGCATCACTGTAATTGTTAATGAAGCACCATGTCATGCTATGAATTCGGTCCAAATTCATCTGTAAAGGATCCGAATCCTACAAAATTATTCCCCAATTTTCGTCAGATATCATCAACCAGCTGATTCTCAAGAACACGGGAGACAGAAACTAAGAGGCCACCAAGCAGCAGGAGAAAGGCACCAAACGCCACCGGCGGGCTGACGGGGCCGGCGGCGACCATGGTGACGGCGGTTGAAGCAGCGAAAATCCCCACCACAGTTGACAGGTTGCCGCCATGGCCGCCGCCGGAATCTGCACCGGCCGCTACCGGCACCTCCTTGGCACCGACAAGAACATCAATGGCAACCTGCTCCGAGTGCGGGGCGGAAGGCGCCGGGCGGAGAGCCTTGTCGGTGCGCGCGCCGTGCTCGTCGGCCGCGACAAGCCCGGCGAAGGGCGGCGCGGCTGTCTTGCGCGCGAAGGAGTAGTCGTCGGAGAAGAATTTCTCGTCCAGGAGAGGTGTGTCGATCTCGCGCAGCCCAGCGGGGTGATTGTTTCCCAGGAGGGCGTCGCCGAATGACATGCCGCGTTCACGCGCGAACACGTCGCGGTGCTTGTCGAGGAGGAGGAGGAGGAGGAGGAGAGGCTCGCCGGTCTCACGCGGGAGGAGGTCGGACTCGGACACGCCGCGCTCGAGCGCGAAGACGTCGTTGGCGTTGGTGCCACCCACGGTCAGCCCGCCGGCACGGGCCATGTCCACTAGCGGCGCACCGGTCTCGCGCTTGAAGAAGAGGTCGGACACGGCCAGACCGGCCGGACCGTTCTTGCTGAGGAGGGCCTCGCGGGAGGACACGCCGCGCTCGCGCGCGAAGACGTCGGCGCCGTCGGTGTCGGCCACGGTTAGGCGTGGCCGCGCGTCGCGGTCGGCGAACGGCGCGCGGTGATCGCGCTCTAGGACGCGCGCCCCGGCGGCGGCGCGGTCCTTGCCCGGGATGAGGCCATCGGTGACGGGCTCCGGCTCGGAGGCGCTATCATGGGGATGCGCCGCGACGGGCACGGCCACGAACTCGCCGGACTTCGCCGCCATCTTCCGGGGCACGATCGAGCAGAGCAGCAGGAAAGCAGTTTGTTTTGCGTGGTGGTTAGC

Coding Potentia
Explanation CPC Score
noncoding -1.04572
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0400600.1 8 4857845 G A
Osa08LNT0400600.1 8 4857934 T C
Osa08LNT0400600.1 8 4858293 G A
Osa08LNT0400600.1 8 4858713 C A
Osa08LNT0400600.1 8 4858963 A C
Osa08LNT0400600.1 8 4858781 A C
Osa08LNT0400600.1 8 4858922 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0400600.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0400600.1 8 nan Morphological trait Panicle/flower RG333 RZ562
Osa08LNT0400600.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
Osa08LNT0400600.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0400600.1 8 AsSe2 Resistance or Tolerance Other soil stress tolerance RM1111 RM310
Osa08LNT0400600.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0400600.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus