>Osa08LNT0400700.1

GTGGGAACATTACATATTTGTTGGACTTGATATCGGAGTAGATCACTATGAAATCACCCTCCTACGGCTCATTTAAATGAACAAAATCACCGGCAGATAGGAACTGGGACGCCGTTGTGGCCTGCGGGAAAGCGAGTGCGCCGTCCAACACCGGCAGCCCCACCTTGCCGCCTCCGGCTCCGCCTGAAATCTTCAGTACCACCGCTCGGGCGCTCGGTACCACCACTCGACTGCGCTCTCCTCGGTGCACCTTCGTCCGCAAGCTTGAACCCTCCTCTCTGGCTGGCCGAATAGCTAGCAAAACTGACATGTTATCTAACCTGGGCGAAAAGATTGCGATGGCGCCCAAACCACATGTGTCGCCATCGTCGAGGTCGTCGCCCCATCTGCCAGTCTGCCACCCCACCTCCGTCCCTCCCATCATCACCCGCGGCGGATCAGCACGAACGGAGGGTGGAGAGACGACGGAGGTCGCCGGATCGACCCACCCATCGCCGCGGACGGCAGATCCGCACAAGAGGGGAGCGGAGAGACGACGGGATCCATGCAGGAGGGGAAGAGGTCGCCGGATCCACCCCTCCCGTCGCCGCCGACAGCGGATCCGCGCGAGAGGCGCTAGCGGCGGAGGTGTACAAGTCGCCGGCGTGACGGTGCCCCGGAACAAGACGACCACCTCGCAAAACCCGAGCCGCCGCGTCATCTCGTCGGGGGACATGGCGAAGTACCCGATCCACCGCCCCCCGGCAACTCGACGATGGCTCCATGGTTGATCTGGTGGGCAAAACTAGAGAAGGGG

Explanation	CPC Score
noncoding (weak)	-0.644421

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0400700.1	osa-miR5822	Cleavage	5.0	13.154	1	21
Osa08LNT0400700.1	osa-miR1423-3p	Cleavage	4.0	18.597	1	21
Osa08LNT0400700.1	osa-miR1431	Translation	4.0	21.283	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0400700.1	8	AsSe2	Resistance or Tolerance	Other soil stress tolerance	RM1111	RM310
Osa08LNT0400700.1	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404
Osa08LNT0400700.1	8	qRRE-8	Resistance or Tolerance	Other soil stress tolerance	C166	C1121
Osa08LNT0400700.1	8	nan	Physiological trait	Flowering	C166	C1121
Osa08LNT0400700.1	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0400700.1	8	nan	Morphological trait	Panicle/flower	RG333	RZ562
Osa08LNT0400700.1	8	nan	Resistance or Tolerance	Other soil stress tolerance	C390	C1121

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus