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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0400800.1

CCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGATGTGGGTCCCATGTCAAACATAACAATGGGTGTGAGTGGTGGTAAAAGGAGTATTAGATGTGGGTCTCATATTAAACATAGCAATGGTGTGAATGGTTATAGTGTACTATAAATCAGTAGCAGGTACTATCGTGTAGGGGTGAACAAAAAACTCGAAACTCGTGGCCCGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.23577
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0400800.1 8 5027739 A G
Osa08LNT0400800.1 8 5028457 A G
Osa08LNT0400800.1 8 5028551 A G
Osa08LNT0400800.1 8 5028627 A C
Osa08LNT0400800.1 8 5028683 G A
Osa08LNT0400800.1 8 5028804 T C
Osa08LNT0400800.1 8 5028885 G A
Osa08LNT0400800.1 8 5029554 G A
Osa08LNT0400800.1 8 5029657 A G
Osa08LNT0400800.1 8 5029714 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0400800.1 osa-miR5793 Cleavage 5.0 17.38 1 21
Osa08LNT0400800.1 osa-miR6253 Cleavage 4.5 15.541 1 22
Osa08LNT0400800.1 osa-miR416 Translation 4.5 12.233 1 21
Osa08LNT0400800.1 osa-miR528-3p Translation 4.5 17.574 1 21
Osa08LNT0400800.1 osa-miR2867-5p Translation 5.0 15.745 1 22
Osa08LNT0400800.1 osa-miR2920 Cleavage 4.5 13.285 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0400800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0400800.1 8 nan Morphological trait Panicle/flower RG333 RZ562
Osa08LNT0400800.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0400800.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0400800.1 8 AsSe2 Resistance or Tolerance Other soil stress tolerance RM1111 RM310
Osa08LNT0400800.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0400800.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus