\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0401000.1

AGCAGCCACAAAGCCCACAACCTCATTTGAGGCTCTGAATGATCGCCTTCTAATTCAAAAGGCCTGTCTGTACCACTAGTGTTACAACATGATGTACCTCTCAACTTTTGATACTATGTCCTAATCTAGATGGTTGATATCTGCCCGGATAGCAGAAGCAGCAGGAACATGTGCCATTTGAACAAAGAAACAGATGATGGAAGATATCAATCCCTTGGCTGGAAGCACAGTACTCATTCCAAGGTGAAAAAATGATTCAATGTGCGTCTGTACTGTTCAATGCTCAGCACTCAAATAGAGCAGGGTCTTCATCTCATGCAACACTGGCAACTCTTTCAGACAACTCCAAATTCCAGATAGCTGCAGGAAATGTAATAATCAACCGGCGCGGTTTCTAATGTTTCTGGTAACCCCGTAATAGGTTTTCAACAATTTGTTCTGATCACATGACATCCCATGGAACTGATGGAAGTAATCCAAGCAGCAGGGTTCTTCTAGCAACTCATGTATTTAAGCCACTTGATATCATGATGGTTCAGGACTGAATTGAAGTGAAACAGAGTTCTCCTGTTTCACCTTTCCTCTCCAGAGAATAATCTGTTCGTCTTTAAATAATAGGGGAACACATGGAACCAAATCCCTTAGCTTCACACCGATTTTCTTGCAATCACTGCTACCAACATGAGAGCAATCTAACCTCACAACTTCCACAGTCTTGAAGGCCTCTCTCACTCTATCAACAACATTGACATAAACACCATTCCTAGTTAATTTCATAAGAGGTGAAGAATTTAATCCCGTATTCCTCAATTCTTTAGTTTTCTCGAAAGTCAAACCATCAGCAACATTTTGCACAAGCCTAGGGTAAATAGGAGCAAGTGGCTTCCACAACATTAGTGGTATTTGAGGCCGCTGTTTCGGATCATAATTCCGACCACGGTATAGGATAAGGATGTTTATGTTACGGTAGATTACTTTCCCACCTCAAGATGGAAGCATATATTGTCCATGTCAAGAGTTGGCACTCCCAGGCATTTGATCCTAACAGCTTCTGCACGTTTCCAGTGATTGTGGATGTCATCAATCATATTGTGTGTCACTCCGCCTTTGCCCAAATTGATCTGCCGGGAGCAGTCGCTGTGCCGGTACCTCTCCACGAGCTGCGCCACCTCCTCCTCCGCCAGCGGCTCGCCAAGAACCTCCTCCCTGCTCGTCGCCGCCGCACCCGCACCCTCCCCGCGCGCCGCCGCCGCGGCGACGCCGTCCCATGGCCGGTCGAGCCGGCCGGGCCCGAACGGCGAGAACCGGGTGGGCTCCCGGAACCCGATGGGCCTCCACGCCGGGTCCGTCTCCGAGTAGGAGTACCGGAAGTCGAACGGCAGGTCGGAGCTCGCCGGCTCCGGCGGCCTGATCCTGCCGCCCTGGTCCTCCTCCTCCTTCTTCTTCTTCTTCGAGGGAGCTCGAGGCGGGCGCTCCGCGAGCCGCGTGAACGGCGGGTCGTCGTCGGGATCGGAGAAGGGCGGGGCTCGGTGGTGGTTGAGGCGGCGGGCGATGGCCTCACCGGCGGCGGTGGCGCGCCGCCATGGGAGGAGGAGGAGGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.957338
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0401000.1 8 5147568 T C
Osa08LNT0401000.1 8 5147772 G A
Osa08LNT0401000.1 8 5148369 T C
Osa08LNT0401000.1 8 5149096 A G
Osa08LNT0401000.1 8 5149336 A G
Osa08LNT0401000.1 8 5148956 A G
Osa08LNT0401000.1 8 5147730 T C
Osa08LNT0401000.1 8 5148656 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0401000.1 osa-miR5543 Cleavage 5.0 11.594 1 21
Osa08LNT0401000.1 osa-miR5543 Translation 5.0 15.685 1 21
Osa08LNT0401000.1 osa-miR6255 Translation 5.0 6.956 1 22
Osa08LNT0401000.1 osa-miR1876 Translation 3.5 12.587 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0401000.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0401000.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0401000.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0401000.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
Osa08LNT0401000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0401000.1 8 nan Morphological trait Panicle/flower RG333 RZ562
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus