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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0401100.1

GCACGGAGCATATTACTCTACATGATAACCGCACCCCGTGTACAAATTAAGCAGTTAACAATCCACAAAGACGCTCATACATGCAATTTACACATTGTCGTACAATGAATAGTGCAGATAGTTACATAGATAATATTGGGAAACAAATTTTAATCAGTGATATCTGCCCATATATTTTTTTTCTTTTAAATTCAATACAAATAATTATAAAAAATTTGAAAAAAATGAATAGTCCATCGTGTATTTTTTTCTCCCAAATTCAATACAAATAGTTATAAAAAATTTGAAAAAAAATGAATAGTGACATTTATAGTCCAAAAATTAAAGTTTAAATTCAACATACCCATTGAGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.971101
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0401100.1 8 5274308 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0401100.1 osa-miR5817 Cleavage 4.0 8.339 1 24
Osa08LNT0401100.1 osa-miR5817 Translation 3.5 7.731 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0401100.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0401100.1 8 nan Morphological trait Panicle/flower RG333 RZ562
Osa08LNT0401100.1 8 nan Physiological trait Flowering C166 C1121
Osa08LNT0401100.1 8 nan Resistance or Tolerance Other soil stress tolerance C390 C1121
Osa08LNT0401100.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0401100.1 8 qRRE-8 Resistance or Tolerance Other soil stress tolerance C166 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus