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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0036800.1

ATGGGAGTAGTAATATTATTACAAGAGAACATCTTGGGCTACAATAGCAAGAGCAATAATATGACTATATTTTGCGACAAAACATGTCTAGGTATGAATGCATTTGAAAGAGATGTGAAACTATAGTCTTGTAGCTTGCTTACTGTGAGGCTGGTACTGTTGAACTATTATGTTGTTCTGCTTTCACTTCCTAACTTTTACTAAGATGATGCTGAAAGTTCAAACATCACAAGGGGACAATCATAAAAATCAGATTTCCAGAAGATGGAAAAGAACGCCAGCCAGGAGACGGTAAATAGCAGGACCAGATTCTGTCCAGATGGTTCTATTTGACTTCCAATTCACATATTTTTTCCTCTAAATCCTAATTTTCAGCAACTTGTAAATCACCAACGTCCTCCATCAGGGGATGCATTTGTTCCAGCCAGATGATAAAGCAAAACCCCTGCTGCGACACTTACATTCAAGCTCTCCACTGCAAGGAATGATTTCATATCTTGGTTACCTGAATAATTATCACCTTCTTCCCCTCCATCTGTGTCTGTATCTGCTCCTACAAAAGATCCATCAACATTACCCGGAATTCTGACCAAATGTGTGCAGGATCGCTCAACCAGGGGCCTCAAACCAGTGCCTTCACTACCCAACACAAGGATTGTTGGTTCTCCTGGCACAACTTCAGATAGAGGTATAGCTTTAGGAGCAACAGTACCACCAAGAACTCGCCACCCATTTTCAGCCGATGAAGATAAAAACTGCATCATGTTCCTACAGGAGAGCAGTTCGATCAACTCAAGTGAGCCTGCACTAGCTTTGCTCACTACACCACTTAATGGAGCAGAGTTCTTAGCACATAACACAACACCTTCCGCGCCAAAGAAGTAGGCAGATCTAATTATGGCTCCTAGGTTCTGAGGATCCATGACCTCATCCAAAGCTATCCAGACAGGTGCCTTTCCATCGTCCACCCTGACTGGCTCCAACTCTTTAGTATTCACCATTTCCAAGGGTGATGCATCGAGTACAAGGCCCTGGTGTGGACGGTTATCCACAACCATGTTAAGGTCATGCTTTGATGCTTCGATGACTTTCAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.949966
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0036800.1 1 30982378 C A
Osa01LNT0036800.1 1 30982624 T A
Osa01LNT0036800.1 1 30983258 C A
Osa01LNT0036800.1 1 30983775 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0036800.1 osa-miR166k-5p Cleavage 4.0 19.941 1 21
Osa01LNT0036800.1 osa-miR393b-3p Translation 5.0 20.611 1 21
Osa01LNT0036800.1 osa-miR530-3p Translation 3.5 8.852 1 21
Osa01LNT0036800.1 osa-miR5076 Cleavage 4.5 11.512 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0036800.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0036800.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0036800.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0036800.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0036800.1 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0036800.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus