>Osa08LNT0401500.1

ACTAGCTGTACCAGCACTCTGCCTGCTCTGAAAACCGCCACGTCCGCCTCTTCTGCCACCATCTCTGCCACCACGTCCACCTCTTCTGCCACCATCTCTACCTCCAAACCTACCACCAGATCGGCCGCCAAACCTGTCACCAGATCGGCCGCCAAATCTGTCACCAGATCGGCCACCTCTTCTCCCACCACCATCTCGGCTATCTCCTTTAGGCTTGGCTTCATCAACATACAGGTTGTAGCCACCAAGGTCAGACCCACTTAGTTCAAGTGCCTTCGAGAAGGAAGCCTGATCCTTAAAATCTATGTATGCTATCCCTTTGCTTGCACCAGTTTCACGATCCATGGGAACTGAGACTCGTGTGATCTCTCCGCAATCAGCAAAATGTCCTTCAAGAGATTCTCGGATCTGGATTTGGCAAAGACAACAATCAGAAAAAAAAAGGTGATGCATAATAGGCTAACCAAAGAAATTACCTTGCTCTCCTCAAGAGATGAATCAAAACCCTTGACAAATATAGACTGGCTGGAACCTCTGTTTTGTTTCTGGAATGATCCAGTTACCTGCTGTGAGGGGTGTATGCACCTCTTTCATGAGCCAAGTCAAGTCTCACTGGACGACCATCCA

Explanation	CPC Score
noncoding (weak)	-0.807919

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0401500.1	8	5423025	A	G
Osa08LNT0401500.1	8	5423771	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0401500.1	osa-miR166i-3p	Cleavage	4.5	13.939	1	21
Osa08LNT0401500.1	osa-miR5508	Cleavage	4.0	18.49	1	21
Osa08LNT0401500.1	osa-miR5508	Cleavage	5.0	9.097	1	21
Osa08LNT0401500.1	osa-miR5508	Cleavage	5.0	22.922	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0401500.1	8	nan	Morphological trait	Panicle/flower	RG333	RZ562
Osa08LNT0401500.1	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121
Osa08LNT0401500.1	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404
Osa08LNT0401500.1	8	nfb8	Morphological trait	Panicle/flower	RG108	RZ562
Osa08LNT0401500.1	8	nfb8	Morphological trait	Seed	RG108	RZ562
Osa08LNT0401500.1	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0401500.1	8	dth8	Physiological trait	Flowering	RG333	RZ66

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus