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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0401600.1

CAGCTATCATATAGTAATAATAAGTTAATAAAGGCGACAAATTCACAAGGTCATACAAGCAACACAAGCTTGCCAGCAAAAGCAAAAGACTTACTCCAGGATATACACACACACAAACATAGCCCTACTGTAACGATTCTAATTAACCTCCAAATACTAACATCCTGTATTGGTTAAACAAGGCTATAAGAAGATCACAGAGAATAGTAATCATGGTACATAGTGTAAACCTTGGGGTCATCACAATATACATCCTTTGAGTCGACGCAAGATTCAGGGGACGAGAGGGCAGAGTAGTCTTCGTAATAGTCGCCATAGCTACCATCCTCCATCTTGGCCTCGGCCCGCAGAGTCTCAAACCTCGGCTTCCCAAAGATCATGTAGAGTGATCCCATCATCTTCGCCTTCGTTTTCCCCAATGACACGGAGATCTGGACAGTTAACATGAGGCCATTGTCCAGGCAACCAGACATGTTTGATCTTTGCGCAGCGAGCTCGGAGCTGATCATCAACGTGGATTTTGTAGCAGTCGGAAAGGTCGAGGCACTCAAGGTGGGGGCAGCCATCAAGGATGGCGTACACCCCTTTGTTGGTCAGGTTGTTACCTGAAATCTGAAGAAGCCGTAGCTCGTGCATGTTTTCTGCTATGGCAAAGGCATCCACATTTCGCCTTGCCTCCCACTGCTCGAAAGGTTCTTCATATTCGTCATCATCCTCATCCTCATTGTGATGCTCCTTCATCTCATCCTCCATCGCATCATAATCAAAATACGGCATATGGACTCGTAGACGTTTCAGCTGTGGGCGAACAATGCCAACATATTTGAAAAAATCTGCTGACATTTTATGATGCGAACACTCTATCTCCTCTAGAAGTGGACACCTAGCGGCAAGCGTAGCCAATGACTGCCCCCAAACAAATGTGCATGCAATTAGCCGAATGCTCTTCAGTGTACTACTGGCCCTGCTCACGATGTAATCCAAGAGTTCACAAGTAACAAACTTCTGAGCCCAGAACGACTCCATCCGTCCATCGGAGCGGTCTATTGCCGCTTTTGCCATCGCACACAGTATGTCTGTTCCCTTTGAGAAAATCACCTTGTGGCGTGTCATGTCCACGAATCGCCACAGTTCAGGTGACTTTGAAGCCGCCAACCATGAGTGGCACACAAAGCTAGCACCCATCAGAATCTCAACAGTCCCAAGTTTCATGAAGACTGCAGAAAGTGCATCCACTGGAAGCTTGGACCAATCTCTGTTAGTATCAGGTAAGGGATCACCTGGGTCCACCTCCATCGTGCAAAACAAAGCCTACTTACCTTCGCCGGCGGCGAGTTACGCGGCGGCGTCCGCCTCTTCTACTCCGGGCAGCACAGTGGTGTAGCAAGGGTTTCGAGCTCCAACGGGAGACTCCGACTGAAGGTGAAGGGGCCTGGTTTATTTTTGCCATTTTCACCTTTTTATCC

Coding Potentia
Explanation CPC Score
noncoding -1.03525
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0401600.1 8 5441259 A C
Osa08LNT0401600.1 8 5441527 A G
Osa08LNT0401600.1 8 5441647 T C
Osa08LNT0401600.1 8 5443135 T C
Osa08LNT0401600.1 8 5443423 T C
Osa08LNT0401600.1 8 5443996 C T
Osa08LNT0401600.1 8 5443551 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0401600.1 osa-miR5820 Cleavage 3.5 23.141 1 21
Osa08LNT0401600.1 osa-miR7695-3p Cleavage 4.5 21.057 1 21
Osa08LNT0401600.1 osa-miR171f-5p Translation 3.5 16.57 1 21
Osa08LNT0401600.1 osa-miR166g-5p Translation 4.5 21.33 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0401600.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0401600.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0401600.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0401600.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0401600.1 8 nfb8 Morphological trait Panicle/flower RG108 RZ562
Osa08LNT0401600.1 8 nfb8 Morphological trait Seed RG108 RZ562
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus