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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0402000.1

CGACCAGGGAACTGAAAATTAATACTGACCAATATAAGTACCTGAATATTGTCTTTTAAGCCTTAACGAAACTAATATGAGCTTGAATATCGTCCTCAAGCAATATGAAAACTACTACCGAGTAAAAGACTGCCGGTACTTTCTGAGAACTGGAGTACCATAGGTTCAAACTATCAATTGACAGACATGGGACATGCAACGCGAGCTTCAGAGAGTTGAGCGAAAAAGGCGAGCATCTAAGCACTTCACTTCCTGGCTCCACACTTGGATGGAATTCACATCAGGAGCGCACGCAGGCCATTGAGCATCATCCTGGCTTCATCATCCAGCTCGTCCTCGTTGATATCATCATCAAAGCATTCATTCTCCTCCGAGAACACGACGCAGTGAAGGCCGGGAACCATGTAACCGTCATCCATGTCATCAGAGGAATTGCCTGAATCTGCAAAAACAGGGCTGAAAACCTGCAAGTCATAGTCATCGATTGAGTCATCGGGGAGCCTCAGTGCTTTGATTCTGGCGCACTTCGCTCGCAGGGTGTCATCCATGAAGACATTGAAGCAGTGGCGTATGTCGAGGGATTCAAGATGGGGGCAGTTGTCAAGGATGGCTTCCAATCCTTCATTGGTGATGGTATTGCCGAAAATCTGAAGGGAGCGTAGCTGAGTCATAGTTGCTATCCCCAGGGCTTCATCATCATCGTGCGAGTCTTCGAAACTGTGAAAGCCATGTTGACTCAGTCTGAAGCGCTTAAGCTGTGGACATGATTTTCCAACAGTCCTGAACACATCTGTCCCAAAAACATTTGGACTGAGTGAAAGCTCCAGCTCCTCAAGCAGAGGGAACTTCTTTATTGCTTTTCCAAACCCTTTGTTAGAGACATCATAACAAGAGATGAGGCGAAGGCTCTTCAGACCTGGTGCTGCGCGGCCGAGGAAGAGGAGGAAGCGGTCGCTTCCGGCCGACTCGCCCCAGAACGCCTCGCACCGCCCCGCGCTGCGCTTGACGGCGGCCTGCGCCATCCCGTGGAGGTTCACCCCCCGCTTGGCGTCGGCGTTGGCGTGGCCGCGCATGTCGACGCGGCGCCACAGGCCCGGATCGTCGCGGGCCGCGCGGCGCCAGGAGCGGCACACCTGGCCGGCGCCCGTGAGGATGTCGACGTGGTCGAGCCCCCCGAGGACGGCCGAGATCGCGGCCGGCGGCAGCTCCGCCCAGTTCCTCGCCGCCTACGCCTTCGGTGCCCCCGAGCCGCGGCCCCGGCGGCGATTGCCGTGATGGCCTCGGCGGCGGCGGGAGGAGGACGGCATCGCGTCGCGCGCCGCGGCGGGGATTGGGATTGTTAGGGTTTGGAGGAGGAATGGAAGGCGGGAGGGGAGGCGGTTTTCTGGGCGAGTGTGGGGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.843026
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0402000.1 8 5584639 T C
Osa08LNT0402000.1 8 5584291 A C
Osa08LNT0402000.1 8 5584311 A G
Osa08LNT0402000.1 8 5584613 T C
Osa08LNT0402000.1 8 5585549 A G
Osa08LNT0402000.1 8 5585578 A C
Osa08LNT0402000.1 8 5586394 T C
Osa08LNT0402000.1 8 5586559 C G
Osa08LNT0402000.1 8 5586682 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0402000.1 osa-miR5340 Cleavage 4.5 16.528 1 23
Osa08LNT0402000.1 osa-miR5500 Cleavage 5.0 21.669 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0402000.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0402000.1 8 nfb8 Morphological trait Panicle/flower RG108 RZ562
Osa08LNT0402000.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0402000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0402000.1 8 nfb8 Morphological trait Seed RG108 RZ562
Osa08LNT0402000.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus