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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0404200.1

GGAAGTAGAATAAATGAGATACAGTAACCCGACAAATAATTTAACAGCAACACAAACAATCCTATTACACAAGGGCAATGCAAAGGGCAACCCGGAACAAACACCAAATCTCAGAAAACGATAGTAGCCGAAAACAACCTAAAAACCACCTACATCCAACCAAAATGATTAAGGTTGTGCTCTTCTGCCACAAAAGCAAACCACACTGAGCAGAACTCTCTAAAGAGCGACTCAAACCTAAAACAGTGGAGGTCATGTGGTGCTCTCATATGAGCTAAACAGGTTGAAGCAGCTATCGCCAAATCAATCGCAGACGCGGCTATCTCTCTGTAAGACACCATATATCTGAAATTGTAGTCATGAACAACAAATCCATAAATGGACTGAAGGAACCTGACAGCCTCCCTAGCAGCAGGTTCGTGTGCTGTCTCGTACGGCTCGAATGCAACACACCAAAAGAAGCGACACCCTCTCTGGCCTGAATGTTCCCCGCTCACAAGCACAAGCTCCACTCCAGCAAGAAGAACACCATCACTCCCCATTTCCCACAGGTATGAAACCAACGGCAGCTGGCAATGGCTAGCCACAGCGTTCAACAGCGACACAGAGGACACACCGATGGAAGACACACCGAGGGATGGCATACTGTCAGGAGGCTCAGAAGACACCGAAGCAGCAGTAAGCAAGAACAGAGCGAGCGGACAAAGCGAACTGCCCCCCGAGTGGCAACTCCAGGGACCAGCTCACGCACGGTGCCACCCCTGACCGTCTACTCCAGCGATCAGCTCAGGCTAATTTCTCCATTGGCAAACAGCAAGAGCTCAAAGTAAACGTGAGAGGAGGATAAGATGGTATCGCCCGGCTTGCTTGACGCAGTAGAGAAAGCAGCCTTTCCTCGGGACGGGGCGAAGAGAGCATG

Coding Potentia
Explanation CPC Score
noncoding -1.15454
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0404200.1 8 8148178 A G
Osa08LNT0404200.1 8 8147687 C T
Osa08LNT0404200.1 8 8147690 T C
Osa08LNT0404200.1 8 8147935 A G
Osa08LNT0404200.1 8 8148517 T C
Osa08LNT0404200.1 8 8148624 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0404200.1 osa-miR399a Translation 5.0 18.717 1 21
Osa08LNT0404200.1 osa-miR399b Translation 5.0 18.717 1 21
Osa08LNT0404200.1 osa-miR399c Translation 5.0 18.717 1 21
Osa08LNT0404200.1 osa-miR444a-3p.1 Cleavage 4.5 22.252 1 21
Osa08LNT0404200.1 osa-miR444d.1 Cleavage 4.5 22.252 1 21
Osa08LNT0404200.1 osa-miR2868 Cleavage 4.0 8.801 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0404200.1 8 nan Resistance or Tolerance Drought tolerance RM72 RM331
Osa08LNT0404200.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0404200.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0404200.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0404200.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus