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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0405200.1

AAGATCAAGTATACCTCCAAGCTTTTGATAAATTGTTTGCATATTTCAAGAATAATTTTGATGATGGTATCAAATCCATGTATCACAAAGTATCTGAAGGTGGGGGGCTTCCTGTATTTATCTGCCTAGTAACTGCCCTCCTCTGTCGTCGGCCTCCTCAAGAAATAGCGCAAGCTATTAGCAAGAACCTGCTGCAAGGCTTTGATCAATGGTTTACCCCTATAACTGACATGGAATTTTGCTTTAGCCAGTAGGCCCTCAGTGTCAAATTCTCCAGATTGGACGGTGATGTTGATGTCATCAATGATCTTAACAAGGTCAACCAACAAACCTGGTCGGTCAGCTGTTTCCACTACAAGTAAGCTTCTGTCAGGGCCATCATCATATATGTCTATGTGGGTTGCTATGTCCACATCAACCAGTTCTGTAGGGGGCTCTGGACCAAAAGTTGCACCCAGAGCCAATTGGCTGCTAGCTTCTGGGTGGTACTGAATCATGTTGTTTATAATTGTCAGCCGTACTGCTTCTAACAACTCTGGTTCACCAATTTTGCGACCAGTCGACAATTTTGTTATAGCTAACTTAATATGCTTGCCAGTAGAATCGAGGCAGACGCTAGCTTTCACAACATTTAGCCCTAAATTCTTCAGGGCATTCATGGTATCAAGAAGATCACCGAGACGGTCACCCAAAGTTATCTCTACAATGGTCGCATCCGGATCTGAGTCTTGATCTATTATAACTTTCGGGGTAGGAACTGTGTCAGTGTTGCTAGAGCTCCCATCCTCGACAGCCGCAGAGGAAGCAGCTCTAGGAACCCTGACAGCAGGAGAGGACAGCCTCAGCCCAGCGTGCGGCGGCGGCGGCGCGAGAGCCCGCCACGCGGCGGGGCGGCGGCGGCGGTGGCTGGTCCCGGACACCGCCGGCGAGACGCCGGAGCAGGGCCGGAGGGCGGCGGTGACTGCCATTTCGGCCATGGCAAGAAACGGAGCCGAGGAAGGGAGGGGGGGGGGATCCCAATCCCAAGAAGAAGAAAAGGAAGCAGCTTTTGGTTGGGTCTCAGCTGCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.927308
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0405200.1 8 8669491 A G
Osa08LNT0405200.1 8 8670138 T C
Osa08LNT0405200.1 8 8670176 A T
Osa08LNT0405200.1 8 8670364 T C
Osa08LNT0405200.1 8 8670384 A G
Osa08LNT0405200.1 8 8670617 C T
Osa08LNT0405200.1 8 8671032 T G
Osa08LNT0405200.1 8 8671637 G C
Osa08LNT0405200.1 8 8671939 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0405200.1 osa-miR394 Translation 5.0 21.298 1 20
Osa08LNT0405200.1 osa-miR2929 Cleavage 5.0 15.727 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0405200.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0405200.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0405200.1 8 nan Resistance or Tolerance Drought tolerance RM72 RM331
Osa08LNT0405200.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0405200.1 8 hd8 Physiological trait Flowering RZ562 RG978
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus