>Osa01LNT0002400.3

CCTTAATGCAAAAAACTACTGCACTGATAAAATTACATCCAGAATCATGTGCTCAACTGCTCATATGCTGTTCTACACTGATGCATCCTACCAAAATACTACTACAACAACTGAACTACCACAGGAATGCTCCTGCATTTTATTTTGCTACTGCAAGGAGCAATGGAGCTCATAGACTCCAAATCTTTATGACCAAGGCTAAGATAAATAAAACAGGGAGCCGACAGGTTACATACATCTCAGCATCTAACATAAATTTGGGAGGAAGAAAGCTTGTGACCTGTGACTGATTTTGTTTCACAAGTCAAAATCAGTTAGTTGTGATGGATCAAAGGGGAATGGGTAGGGTAGGCAGACAAGAAGTCCAAAGAGCAAGATGGCTACACCAATGCTGATGTAATTGTTCTCAGGTTCTGTTATTTCTTCAGAGAGAGGGGAAATCGGTCCTCTCTGCAAGAAGAAGATCAGCACCACCCAGTAGAACGCGACGTCGTTGAAGAGAGCTGAAATTCCAAGAAGTCCAATGGCCAAGCTGCTGATTCGAGACGATATCTTTCTTCCCCACATGGCAAATGCTATGCGGCCGCCATCAAGCTCTCCTGCAGGGATGCTATTGATGGCATTGATCAGGAGACCAGCCCAGGCCCATAAGACCAGTGGATTTATGGATAGTTTTGTTCCTTCTTTTAGAGCATCTCCAAGAATAAGCTTTGCAAGACCACCAACAAGAAATGATTCATGAAATACTGCTGGATCTATCACAAGGCCAAGGCCATCACTTGGAGGTAAGATGAAGCCTAGCAGCAAAAGAACAAATCCAAGGGAGAACCCTGCCAATGGTCCAGCAGCTGCTACCTTCAGTAGGTCCTCACGATTGCGGACTATATTGACAATTCTGGTAATAGCACCAAAAGATCCTATCTGCCAGCTAGGAACAAAATATGGTACGGCAAGCTTGATTCCAGTATCCCTAGCAGCAAGGATATGTGCAATCTCATGAACGCCTATTATGGCCGCAGTTACTAGGGCGCCATAAACTCCATCTTTTAATAGCTCAAGGTTATCAAATGTTGATCTCATACAGCAAGTTGTCCTGTAGCAAAGGTACATTTCGGAGCAAAAGGGTGAAGATGGTAACTACTCCAAATGAAGCAGCAGCAAACCACTCTGGGACAGCTGTAGTTTCAGGCTGCAATGTTTGCCTAGGTACAACTACTGCAACTGGCTTATCATCCTCTGGGTTAATGAGAAGAAAAAGCTTATATTGATCACCAAATTTGTTCTGCAGCCGATTTGTGATCTTCTCATAACTTTTTGCTGGCTGACCACGCAAATTTCCCTTAAACAGTATTCCACCCTCATAAGGCTCCTGGCTGGTCACGAAAAACGTGTCAAAACCAAAAACTTGATCCTTGAGAATGTCTATTGTAGCCTTGGGGATCCTGACAGATTCATCAAGTTGTTGCTTCATTCCTGGCAAAGGTGAACCGACAGCAACATCAACTACTTCCACATTTTCCTGTGCATCACTGGCTGGAGTAGCATCTCCATCAATGTTCTGAACTGTGTCACTGGAGCTGAGTGGTTCTGTATTTACAGTTTCGTCTTTCGTATTATCTGCATTAGTCTCACTTTCTGCAGATCCATTTTCTTGTGTAACACTATCAACCGAAGGTGATGAAGCATCATCTCCAAGCTCTTCTTTCTCCTGGAAGAAACAAACAAAAGAGAAAACATGTTTACCCCCTTGGATTCCTACTAACATGAATAACATGAACTTACTCATCAATTCCACATTTTTTAGTCGCTTTAACTCCACTGAATATTTCACCACTACATCAGAAAACGCGACACTGAATTCAGTTGAAAGAAGCACATGCGGATATCATGGATAGATGATGAAACATCGAAAATGCGACACTTCAAGGTGAGATGCAAAAATGAGGGGATATCCCCTTAAGGGATGATTTGAGTTTTCCCACTTCAAACTTCAAAGCACAGTAGGCCATCCGCGAATTCTCTGCAAAATGATAAACATACACCGTTCGCGAAAAAAATGATAAACATACACTATTAACATTCAGTCGCCCATACAACAGAAGTGTAACTGTGAATCATGGCACGCCAATTGCAGATCACTACCTAACCCAAGAATTTACAAGGGGGTAAACACACGTAACTACCTCGTCGCCATTGCCGTCGCCGTCGGGCTCAGTCTCAGTCATTGCCTGGCAGACAAACCTTCGGTTCCTGATCTGAAGCGAGTGGGTGGAGCGAAGCTTGAGACCGAGGCGGGCGGGCCTCCCCGTCGCCGGCAAGGAGGTCGACGCGAGGAGGATGCGCTGGCAGCATCCGTACGCCGCCGCGGCAGCGGCGGCGGAGGACTGCGACGGCGAGCAACTCATGGCGGGTAATTGCATTCGCGGCCGTGGTGGTGGAGAGCGCGCGGCCTTATCT

Explanation	CPC Score
noncoding	-1.04996

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0002400.3	1	2267965	A	G
Osa01LNT0002400.3	1	2268052	T	C
Osa01LNT0002400.3	1	2268154	G	A
Osa01LNT0002400.3	1	2270064	C	T
Osa01LNT0002400.3	1	2270233	A	C
Osa01LNT0002400.3	1	2268398	C	T
Osa01LNT0002400.3	1	2270411	T	A
Osa01LNT0002400.3	1	2270425	A	G
Osa01LNT0002400.3	1	2268502	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0002400.3	osa-miR5812	Cleavage	5.0	21.099	1	24
Osa01LNT0002400.3	osa-miR168a-5p	Translation	4.0	20.809	1	21
Osa01LNT0002400.3	osa-miR408-5p	Cleavage	5.0	19.218	1	21
Osa01LNT0002400.3	osa-miR395v	Cleavage	4.5	9.971	1	21
Osa01LNT0002400.3	osa-miR1438	Cleavage	4.0	10.211	1	22
Osa01LNT0002400.3	osa-miR1438	Cleavage	5.0	11.971	1	22
Osa01LNT0002400.3	osa-miR2092-5p	Translation	4.0	10.866	1	21
Osa01LNT0002400.3	osa-miR2863c	Translation	4.0	11.305	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0002400.3	1	gp1a	Morphological trait	Panicle/flower	RM1	R753
Osa01LNT0002400.3	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0002400.3	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0002400.3	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus