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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0406000.1

CACGAGACTAAATCAACTAAAGACTTTTACAAATTGTCGATCGATTCCCTCAAAATGTAACACAGATTTCGCAGTAACATTTGGCAAATATGCCATGTTTCATGCACTTGTGACGCTTGACTCTGCCTTTATTGTATTTCGCCTCAAGCCAACAGTCCAACTTGCACGTAGGACCCACGCAGACGATCAGCTTGCCAATGGCTTTGTAGCAATAATCTGTGGCAGAAGCAGGACCTCCAAGTGCTAACACAAGCAGTAAGATGCAGCAAACAACACTGGCTTTTCTCGCTTCCATAGCTGATTTACCGATCGATGGAGACTTAATTGGCAAGGGAGAAATGATTAGATCGATATAACCCTAAATGCACTCTAGCTAGGAATGAAATCTAGCTACTTTGTGATGCT

Coding Potentia
Explanation CPC Score
noncoding -1.18854
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0406000.1 8 9433592 G A
Osa08LNT0406000.1 8 9433678 T C
Osa08LNT0406000.1 8 9433897 C T
Osa08LNT0406000.1 8 9433956 G A
Osa08LNT0406000.1 8 9433740 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0406000.1 osa-miR5526 Cleavage 3.5 17.011 1 21
Osa08LNT0406000.1 osa-miR1425-5p Translation 4.5 11.788 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0406000.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0406000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0406000.1 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0406000.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0406000.1 8 nan Resistance or Tolerance Drought tolerance RM72 RM331
Osa08LNT0406000.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus