>Osa08LNT0406400.2

CCAATAACAAACATATAGCACAAAGATTGTAGCCCAGTTAAAATCCAATAAAATTCAGTTCACATATGATACATTGCAAATACATATGGGCCGACCCATTCACATATTCAAATACAATCACAAGTTTGATAAAAAAATAGATTACAAGGTAACTTGCCAAAACAAAATACATCAGTACATTGACCATGCATATCCAGCCATAAGTCACTGACCAAAACAAAGTCACATGTCCACATGGGCCGACCCAACCATGTCCAAATACAATCATAGGTTCACTTACCAAACACAATGTCACGTATCGAAATCACACCAACATACTGCCATCTCTTCATGAATCAGCAAGACAACAAACCTTACCTCATGGCATGTCAATGAGATCCTGTCCTTTGCTGTGTTTCACAGTTAAAAGGAACATGGAACAGTAGAATAGTATGGAACATTCTCATGGTTAAGTTTCTTTCACACTTGTCCTTGGAAAAAAAGGAATAGTTTTCACCACCCAGTTACTACCTTCTTCAGATCTCACCACCCAGTTACTAAAACCCTGCAACAAACAGAACCCAGTTAGTTGAAAAAAAAATAGCTAGTTGATGAAATTTGCTATATAACAAAATGTTATTTTCCTACACAGTCGAATCGCTTCTGAAAAGATGGGTGCAAATTTTAGTTTGTCATAAGGCTGAAAATTTGCTTACAAAACAACTCATGGTCAATGCTAAATAAATGAAAGTCATCTGTACTGACTGATGTTTTGGTAACATAAGAAAGTTTTTTTTTACTGAAATTTGAGAATTGAACTAACCTATATTGACTGAAACATACAAACAAAACTATTTCGATAAACTAACCTATATTGACTGAAATTTGATAAGGACCTCTACTTGCTGAATTTGCTAAAATATAAAACCTAACTACTATGCAGAGTTTTGTTTCTCCCTGAACTAGTGCTCTATATGCCCTACAGTATCTACTCCTACTTTGTCCAAGACAATTCTACTGCATTTACAAAACTAATATATACTTTCTGAAATTTGTTAACAGAACTAATATGTACTTGCTGAAATTTACAAACTACAAAAATAACTGCTGACAAAACCAATACCCATTTTGCATACAAAACAAAAGACTGAACATGGGTATATAATTTAGTTTGTAAGTACACTTGATTGCTCTAGACCATAATTAAAAAATAAACTGATAGGAAACCTAACCTAACATAATTTGTCATATTCCTCTGATTATCTCCACCTGCACATCACACATTTCTGAAATTTTCAGTTCAGATCGGTTCAGCATTTTGTAACAAAGAAACTAAGCATGCTCAGATATCAGGGAAAACGATATATATATACTTTCTTCTGAAAGATGGATGGTTTCTGAATTCTGATGAGATTAACAAACAAGGCTTCAATTTGATTACAAGTCAAGAATTATGTTACTGTGAGGTTAGGTGAGGTGAGGAATGCAAAAAATGCAAATTGCTTCTGGTGGAGAGTTAGACAGTGATAGATGTGAAGGACTTTCTCCTTTTCCGCAACAACAAACAACATATATTGCAGATCTTCAGAGCAGTACACTGCTGCTGTGGCTGTGTCTAAATGCCTCCTATAAAGTTATACTAGTACCCATATATGCATGCACAAAAGATGCGCACGCACACACGCAGACAAATCCAAGTGATGACTGATGCTGATGCCTGATTCCTTGTGGTGGTTTGCAGTGATGGCATTTCACTAGCTATAGCTACCTTCTCCTCCTCTCACATGACAGATCGATGCCCCAACCAACCAAACCTATATATTAGTAAAGCTATAGCTACCTTATCGTCGGCGGCACCGGATCCGCGCGGGGCGGCCGAGCCGCCCCGCCGCCGCGGTGTTGAGGAGGGGGGAGGGTCGCCTTATCATCGTCGTTGTCAGCAGCGGTGAGGAGGGGATGGCGGGCCGCCGAGCCGAGGTCGCCGAGCCGCCGCCCGTCGCCGCCGTAGCCGCTCCCTATGGCGGCGGATCCGGCCCTCCCGAGGGCGGCGCCGCCGGATCCGCCGCCCGCCGACGCCATCGCCGCTCCTGCCCGAGGTCGCCATCCGCCGCCGGCACCACCCGCGTCGTCGTCATCGTCGCCCACTCGTCGTCGCCGTCGTCGGGGTCGGCGTCGTCGTCGTCGGGGTCGCCGCCGCCGCCGCCACCACCACCGGGGAGGAGCGGCCGCGCGCGGAGGGCAGCCCGAGCGACGGGGGCGCCGAGAGAGGAAGAGAAAGAGAGGGAGAGGAGAGAAAGAGTGAGAGAGAGAGAGAGGAAGAGAACGTGTGAGGACTGAGAAGGGGAA

Explanation	CPC Score
noncoding	-1.14585

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0406400.2	8	10086883	A	T
Osa08LNT0406400.2	8	10086841	A	G
Osa08LNT0406400.2	8	10087151	A	C
Osa08LNT0406400.2	8	10087222	G	A
Osa08LNT0406400.2	8	10087281	G	A
Osa08LNT0406400.2	8	10087289	A	G
Osa08LNT0406400.2	8	10087679	T	C
Osa08LNT0406400.2	8	10088159	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0406400.2	osa-miR166k-5p	Cleavage	4.0	10.006	1	21
Osa08LNT0406400.2	osa-miR169r-3p	Translation	4.0	13.399	1	21
Osa08LNT0406400.2	osa-miR2868	Translation	5.0	10.669	1	20
Osa08LNT0406400.2	osa-miR2868	Cleavage	5.0	12.986	1	20
Osa08LNT0406400.2	osa-miR2928	Cleavage	3.5	9.483	1	20
Osa08LNT0406400.2	osa-miR2929	Translation	5.0	13.04	1	21
Osa08LNT0406400.2	osa-miR5494	Cleavage	5.0	14.869	1	21
Osa08LNT0406400.2	osa-miR5082	Cleavage	4.0	17.809	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0406400.2	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0406400.2	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0406400.2	8	hsa2(t)	Physiological trait	Sterility	nan	nan
Osa08LNT0406400.2	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121
Osa08LNT0406400.2	8	nan	Resistance or Tolerance	Drought tolerance	RM72	RM331
Osa08LNT0406400.2	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus