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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0408400.1

CAAACTGAGCCATCTCAAGCCAACTTCCAAAATTATCCATTTTTGCATACAACTCCCTGAGTTCTAGGGCAATTATTAATCAGTCCCTTAACTCTGGAGTAACCTCCAAAATTCCAAAAGCTTATGGACTGGAATGCAAAATTACTAAGTATCCCAATTTCACCAGATTTCCATTAAATTGTAAATTAGTGAGCCTCTCAAAATTATTCCACCGAACATGCCCTGGTGAGGTTTCAAAGCTAGCAGCAGCCATGTGGTCCAAGCAGGTGAATCACCAGCACCAAATGCACTGAGATAAAGCATAACAATGTGAATTATCCACAGTCTGGTAGAGCCAGCCTTGGTTGCAACGATAGACACCTAGCTACAGCTAGCAACTCCCAGTAGTACAGCAGCCATAGTAGTAGTAAGATCCCAGCAACAGCAAGCAGCCTCGGCTGGAAATCAGTGGAGATTGGGAGAAAGAGAAATAATCACAGCTAGTAGATCAGTAGTTCAACATCTCAACCATGCTTCACCACAGCCGTAGCAGCCTTGTGTGTGCAGCCAGGAGAGGCTAGAGTGAGTGAATGAGAGGTCAGAGGAGTAGTAGGAGAAGCAAGAAGGAGCAGCAATCAAGCAAGAGGATCAACACCAGGAAAAGCAAGGGAAGTAGCAGATCCAGATATCAATCAAGATTTTCACATATCTTACCATGTAAACCAAAGCAGCAAGAAGATGCTGAAGTGAGACAGCAGAGAGACCAACCTGAAGAAGGAGCAAGTGGTGTTCTAGCAGAGTTACCATTGATCCAGAAGAGCAGCAGTAGAAGAGAAGACTTGGGTTTCTGAAGGAGGGGCTGAACCACACATTTTTCAATCACTGTAGAATCATCAGAGGTAACCAAAAATTAAAATAGGGGAGGAGAGTAGATCCAATATAAACACTAGAAATTAGAGGGGGAGAGGAAGAAGTAGAGACCCGAGAGCACACTCATGGGGATAGAACAGGGCCGCCGGAGTTGCGCAGTGCTTGGCACCGGCCATCTCCACGGCAGCAGCGGCTATTGGAGAGGCGAGGGATAGTTAGGGTTTGAACAGGGAAAGAGAGGAAGGAAGGAAGGGGGGGAGAGGAGGAAGCGGCGGCGATGCGCCCTGGGAGCGCAGCGCTCGTGCGCCAGGGAGAGAAGAGAGCGAGAAAGAGAAAGGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.956325
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0408400.1 8 12395135 T C
Osa08LNT0408400.1 8 12395477 C T
Osa08LNT0408400.1 8 12395877 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0408400.1 osa-miR5079b Cleavage 4.0 11.109 1 22
Osa08LNT0408400.1 osa-miR156c-3p Cleavage 3.0 13.666 1 22
Osa08LNT0408400.1 osa-miR156f-3p Cleavage 3.5 13.666 1 22
Osa08LNT0408400.1 osa-miR156g-3p Cleavage 3.0 13.666 1 22
Osa08LNT0408400.1 osa-miR156h-3p Cleavage 3.5 13.666 1 22
Osa08LNT0408400.1 osa-miR398a Translation 4.5 13.619 1 21
Osa08LNT0408400.1 osa-miR398b Translation 4.5 13.619 1 21
Osa08LNT0408400.1 osa-miR156l-3p Cleavage 3.5 13.666 1 22
Osa08LNT0408400.1 osa-miR159a.1 Translation 4.0 12.615 1 21
Osa08LNT0408400.1 osa-miR159b Translation 4.0 12.615 1 21
Osa08LNT0408400.1 osa-miR159f Translation 5.0 12.615 1 21
Osa08LNT0408400.1 osa-miR169b Translation 5.0 21.167 1 21
Osa08LNT0408400.1 osa-miR169c Translation 5.0 21.167 1 21
Osa08LNT0408400.1 osa-miR531b Cleavage 4.5 21.952 1 20
Osa08LNT0408400.1 osa-miR1850.1 Translation 4.5 8.046 1 21
Osa08LNT0408400.1 osa-miR2094-5p Translation 3.5 13.68 1 21
Osa08LNT0408400.1 osa-miR2095-5p Cleavage 4.5 16.772 1 22
Osa08LNT0408400.1 osa-miR5079a Cleavage 4.0 11.109 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0408400.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0408400.1 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0408400.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0408400.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0408400.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus