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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0409300.2

CAAAGATGAGTATTATTTGGGGACCGACAAATATCAACAGTAGGAGATGCCTTCAATGTGATAAGAGGAAATCACATGGATTACAAGCATATATAGAGCCTCCAATGACCTGAAAACTACACCTTACATCCAACCAAAGAAAAATTAATAGAACCAACCAAAATTCCTTGCTTACATAGAAAAAAGGAGCAGGTGCCATGGTGTACCACTGCAAATTAATAAGTCATTTGGAGAAAAAAAAAGCAACTCAACACATTACCTGTTCACATCGGGATGCAACCCAAAGTTATCGTGTTCCTTCAGCCATCACAAGTTCAAATTTTTTCCCCAATTGTGACTTACAAAACATCAACAGCCTGATACACAGGCAATCGATCAAAGGCAGTGGGATGGTCGGCTTCAGTTCGGTGGCATGATTGATCACAACAGGTGCCTAATGAGAGCTAGAGTTCCCCAAAGCAGTGCCGGCTGGCGAATGGGAGGATTAGCGGAATCAGTCACACTGGATCCACCAGTGTCCGGCGATCGGTGAGCTGGTCGTGGAGTTGCATTTGCAGTGGACAAATTAAGCAACGGAATCCAGAGTAACCAATCCAGTGTGTGTGTGAGAGAGAGAGGCGCCCCTCTCCTCGGCCAGTCCCCCCATGATTCAGGCCATGGAACTCGCTCCGATCCGGTTGTGAGTGCTCGGAATCCGATTCGCCGAGGCGAGGTTGAGAGAATCGAATGGATTTTGGGGGAAGCCGGAGGTGGAGGAGTGATTCAGGCCATGGAACTCACTCCGATCCGGTTGTGAGTGCTCGGAATCCGATTCGCCGAGGCGAGGCGAGGCGAGGGTGAGAGGATCGAATGGACTTTGGGGGAAGCCGGAGGTGGAGGAGAGGCGGAGGCGCAGTTGCCATTGCGGAGGAAGGAAGCGGAGTAAGG

Coding Potentia
Explanation CPC Score
noncoding -1.29994
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0409300.2 8 14161126 A G
Osa08LNT0409300.2 8 14161364 C A
Osa08LNT0409300.2 8 14161518 G A
Osa08LNT0409300.2 8 14162105 A T
Osa08LNT0409300.2 8 14162281 T C
Osa08LNT0409300.2 8 14160375 T C
Osa08LNT0409300.2 8 14160939 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0409300.2 osa-miR159c Cleavage 4.5 15.138 1 21
Osa08LNT0409300.2 osa-miR159d Cleavage 4.5 15.138 1 21
Osa08LNT0409300.2 osa-miR159e Cleavage 4.5 15.138 1 21
Osa08LNT0409300.2 osa-miR1859 Translation 4.5 19.293 1 22
Osa08LNT0409300.2 osa-miR2275a Cleavage 4.0 18.211 1 22
Osa08LNT0409300.2 osa-miR2275b Cleavage 4.0 18.211 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0409300.2 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0409300.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0409300.2 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0409300.2 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0409300.2 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus