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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0409800.1

TTAAATTCATAACTAACTAGCCACATGGTTGCGCTTTGCGCAACTCTAAATACATGTTTAAGAACCTGTGTCAATGGCATCCACCCATACACAAACACAATCATCTACGTGGCCAAGACCCCTGAGTAACAACTTGATCCTAAGCATTTATATTGTGATGCGTAGTAGTACATTATAATGTACATGCCCACAAAAAATTTGATCCCAAATCTAATAAAATAACAAAAACAAATGTAGTAGCTTTGTGTTCTTCCACCAAATGCATGGTGGTACCGTGGTATTCACCGATGGTCTGTACAGATAATTTATTTCTCCCTCCTCCGCTGCGTACCCAAGCATAAGGCCCCACCACTGATGTCGATGATTTAATTACAACGCTGCAGCCGTGCAGTGCCTTGGTTGTTCTGCCCTGGATACCGATTTGGTGAATAGGTGTGGACGCAGCTCCTGCGGATACCCTCCTCCTCGCCATCGCTATTCATCTGTCAACCCTTTCCCCCCTTCTTCAGGGTAGCGGGAGATTAGAGGTGGATGTGATGCGCCGGTGCCGGTGGGGTATACGGCGGCGGCAGGGGTGGGATGGAGCCGCGGTGATGAGGGGATGAGTAACGCCGGCAATGGAGACAGAGAGGACTAGAGGGGGAGGTAGCGGCGGCTTGGGAGAAGAGGCGGCGCGCGGCGGCTGGGCCTCAGGAGCGGAGGCGGCGTGAAGACGAGAAGAGTCGCGTTCTTTCTTCTTCTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.24891
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0409800.1 8 14374763 T C
Osa08LNT0409800.1 8 14374804 T C
Osa08LNT0409800.1 8 14374847 A G
Osa08LNT0409800.1 8 14375012 T A
Osa08LNT0409800.1 8 14375231 C T
Osa08LNT0409800.1 8 14375198 A G
Osa08LNT0409800.1 8 14375992 A G
Osa08LNT0409800.1 8 14376393 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0409800.1 osa-miR2093-5p Translation 3.5 21.165 1 20
Osa08LNT0409800.1 osa-miR2097-3p Cleavage 4.0 24.572 1 22
Osa08LNT0409800.1 osa-miR2926 Cleavage 4.0 12.287 1 20
Osa08LNT0409800.1 osa-miR3979-5p Translation 4.0 21.914 1 20
Osa08LNT0409800.1 osa-miR3979-5p Cleavage 4.5 11.419 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0409800.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0409800.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0409800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0409800.1 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0409800.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus