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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0410800.1

GTATCATATCATAAACTGAACCATCCCAGTCAAAGATTCAATTAATTATTTATTCAGAAAAACTCTTGAGTTCTAGGGCAATTACAAATCAGTCCCTAATCTCAAAGCAACCTTCAATATTAGAGACTCTGAGGGACTCAAGTGCAAAAGTACCTAATTATATCAGACTATCTAATAAAAAAAATTAGTGAAACCCTACAATACTCCACCGATCAAGCACTGCATAGGTGTCAAAGCTAGGAGCAGCCATCTAGCCCAAGTAGGTGAGTCACTTAGCTTTCACTAAAAATTCCCACATATATTAACTCAGCTATCTGTGAACCAGCCTCGGTTTGGTCGTGCAGATCAGCATAGGCAGCAAGCAGTGGCAGTAGTAGTAGCAACAGCAAGAGCACAGCCATGTCGCAGCAGCCTCAGCCGCAACAGCAGTAGCAGCAAGCAGTTCGTATGCAAAACCATCTCAAAAGAGAGAGATAGCAGAGCAGTAGCTAGTAATCCGGCACCACAGTTACACCAAATCTCAATAGCAGCAGCCATAGAAAAACAACCAGGGTGAGAGAGTAGAAGGAAAAGAAAGGGGATGCATGTGTTTCAAGAAGAGCAAGGGGTTTCAATTTAAAGAGGAGAAACAAGTAGCAGATCCGGAAGGGCAGCAGTAAACAAGAGGAGGAGCAACACCCTGACCAATTTCAAAAGAAGCTGTAGAACCAGAGGAGAGTCACACGGTCATTAGTCTTCCACAGCCACAGTAGAACCATCAAATAAGGTAATCTGGAAAAAGAATTAGAATGAGAGGGAAATCACATCATGTCATGATTCTTGGTTGATGCATATATTAGTATGTTTAGGAGTTGTGTGCACGCACTTAGTTATATGCATTAAACCTGAAAAATGAACCTCAGGAGATGGCAGCTATGTTGATCTGTGCATATACTAGTATGTGTAGGCCTTGGGTGTTGCATTTGCATCCATTAGAAGCTGAACCAGAACATCTCTGATTCAGTAAAATATTCACATTAATAGTTTGATCTTCAGAACGGTTTGTGTAACTAAAATTTTACTATAGATAAACAGGTGCTCAGGTGATAAATCAAGAAACAGTAGAATGTATATAAAGATATCATCAGTCTTATGTCTTTATCAAATTTAGTAACTGCAGATCTTTATTCATAGTACAAATATTGATATTCTTGACATATAGATAAAATCAGATTTTAGATTTAGCCATGGACTTGGAAATTAGTATCTGAACCCTAGCACATATTCAATTTATCATGAAACATAAGGACCATAACAACTCTATCAATTAGGCTAGTTCAATTAGTAAACAGTAGTATATATTTTAGATTGTATAGAATCACCATATAATTGGATTTAGGGTGAAACATTCATTTATATATAATACCAAGTTCAGGAAGCACTGGTATTTCAGATTAAAATATAGAAGATCATGTAGCAGCAGGTTTTAGTAAAAAGAATAGAACTGAGCAATTAAGGATACCAAACAGAAAACCATAGGTTCTTACAGAAAATAATCTAGAGAAGAGGTTAGAGCATAGCATCTGAATCAAGTGGATATGTATATAATTAGTTGACCAATAGTTTAATCCATGTCCTCATCAACCACTGTAATTAAATAATGTATAAATTTGGTTATTAATCACACAAGCATATAGAGATGAAAATCTGGACACTAGTAATATCAAGGATAAACAATGCATGAGTTTACTAATTCTATGGGATTTATATGTGTAATATGTGCATATGTATATCTTCATTTTTTTCAGTTTAAGTGCAAAATTAGTAGTAGCTTATGAATTATCAGGAAGCAGTAATATCCATAGGGACTTGATCATGTTAGTGTGCTTTTAATTTCAGTCCTGCATTTTCATAAGATATATTCATATGAGCATTCATTCATCATGGGCATACAGGCATCATCCAATCTAGCAAATGAATTGATCTAGAACCCTAAAACTAGTAAATACAATCAATAGCATAGAGTCATCAAGTTGATCATTAGGATTAGTCTCCAAGTATCATCAGTGCATCACAACCATAAATCATAAGGGAAAGAACACCTTACCAGTATAACACACTAGAGATCAGGGAAAAGGAGATAGAAGGGAGGAATCGAAGTGGTAGCAGCGGTAGGGGCCTGGGAACTTCCTCTGAATCCTTACCTCGCCGGAGTTTTGCCGGCGGCTGCATTTAGGATTGAGGAGGTTGGAAGTTAGGTTTAGCTTAGGGGCAGAGAAGCGTGGAGCCAAGAAACCGATTCGCGGCTGCGGGACATCTGCTTGAGGGGTCGCCGGAGTGGGGCGCGGTAGCCGGCGCTAGGGAGAGTGGCGGCGTCGCCGGCGCTGCCTAGGAAGCGGCGGCACTGGAAAGAACGTGGGGGAGAGAAGGGGAGAACGAGGAGAAAAAAAAGAGAAGAGGAAGAAGGTGGTGT

Coding Potentia
Explanation CPC Score
noncoding -1.27914
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0410800.1 8 15729743 C A
Osa08LNT0410800.1 8 15730072 G A
Osa08LNT0410800.1 8 15731860 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0410800.1 osa-miR5530 Translation 4.5 14.278 1 21
Osa08LNT0410800.1 osa-miR166g-5p Translation 5.0 22.237 1 21
Osa08LNT0410800.1 osa-miR1874-3p Translation 4.5 12.971 1 24
Osa08LNT0410800.1 osa-miR2118i Cleavage 5.0 22.888 1 22
Osa08LNT0410800.1 osa-miR2863b Cleavage 3.5 22.172 1 21
Osa08LNT0410800.1 osa-miR2878-5p Cleavage 5.0 20.24 1 24
Osa08LNT0410800.1 osa-miR2929 Translation 3.5 9.17 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0410800.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0410800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0410800.1 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0410800.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus