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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0411000.2

GACTGAATATGCACAATCCTTTGTAGGGATAATTTTTAGAAGCTCAATATTATGAATCGGCGATACGAATCATTTAGTGTTTGCCTATTAGACATGGTGAGCTAGCAATAGCTAGAACATCAGTTGGTTGATCCCCAGGCCAATACAGAAGAACATATCCTTGGTCTTATCTTCCCAGCACAAAACAAAGAGTGGCCGAAGCATGAGCATTGCTATACTTGAGACAGCTTCTTGCCATGGTAGGTGGGATAATATTACATGGGAGCCCCAAATATTTGAGCGACTCCAGTGGCAGTGTATCTCAGAATAGCTCGCACAATACTGAAGCTCTGGGATGACCACCTTCATCAGGAGATGAGCTACAGATGCATGTCATTTGGCCCATCTCTTGCTCAGAACTCCGGAGCAGAGATCAATGCAGTATGAATGTTCACTATTATCTTATCTTGTGTTTGTTTCTCAGTGGAACAATTGACAGCTTCATCCATTATGTTTTCCTGAGCTGAGGATAGTGCATTGGCCCTCTAGACAGGAATAGGTATTTTGCAAGAGGAAATTTGTTCCTTTAAACTGACCAACGATTTTTCACTTGTCTACAAAATTGTTGTGTACCCTTTGATGAATATCTCTTGCTTTGTACTTGTATCTTGGGTGACCTACCGATTATAAGTGTCTGGCAACTATCTCACAGGCTTACAACATTTAGTTACAGAGTGGCAATATTTGACCATATAGACAGGATGAAAACCCTTGCAAGTTGACAGCTCGAGTTATGGTTGAACTTAATAGAGGGCTTAAGGAACCCTGTACAACTCCATAGTTATTTGCATTCCTTGATTTGGCCTCTAAAGACTCCTAAATATCAAGCCAATCATATCTGAATCTGAATGTACACCATACGATGAGGGATTGGAATAGGTAGCCTAAAAACGCATTAGCAGATTACTTAGGTATCCCAGTTTCCTCCTCCCTCACATTTCCCCCCTTGCTCCTTGATTCCTCCTGTTGCTGCTTGCTCAGCCTCCCAACTCAGCTCCATCTTGCAGGCTTGCAGCCACAGAGAAATCCAGAGAAGATGAACGGAGCAGCCGAGGAGGGAGCTTGAACAAAAGAAAACCCCACTCCCGTGTACGGAGATGAGGCAATGGTCAGTGGCCAATCCGATCGCCACCGTACGGGGAGACGAACGCCGATGGATGCGGCTACACGGATTGTGCCGACGGAGGAGATCATGCATCCAACGTCTGGGCACGGGATAGCAGATGGCAAGCCGTCGTGGGCGACGACCTACGATGGAAGATCTTGGAGGAGGCGAGGAGCATCGATGCCACCTCTAGACGGAGAAATCAGGGAGGATCGCTCGATGGGGACGACGGGATGCGACGTGGGGAGATGAGCGACGACCGAT

Coding Potentia
Explanation CPC Score
noncoding -1.13576
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0411000.2 8 15756044 T A
Osa08LNT0411000.2 8 15756258 T C
Osa08LNT0411000.2 8 15756722 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0411000.2 osa-miR390-3p Translation 5.0 21.608 1 20
Osa08LNT0411000.2 osa-miR1874-5p Translation 4.5 17.59 1 24
Osa08LNT0411000.2 osa-miR2055 Translation 4.0 23.552 1 21
Osa08LNT0411000.2 osa-miR2094-5p Translation 5.0 20.285 1 21
Osa08LNT0411000.2 osa-miR2275a Cleavage 4.5 22.224 1 22
Osa08LNT0411000.2 osa-miR2275b Cleavage 4.5 22.224 1 22
Osa08LNT0411000.2 osa-miR5504 Cleavage 4.5 15.692 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0411000.2 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0411000.2 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0411000.2 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0411000.2 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus