>Osa08LNT0411400.2

GCTCCCTCTTCTTCCTTTTACTGCTGCTTTCCCCTGAAGTCTGATTCTTCTGATTCCCGCTTTTTGGTTCTAGCTAGTCTAGTGCTCTTCCCAATCCTTGATTATATTTCTCTCTTCTATAGTTTGTTACTCCACTTGGTGGTAGTTTAGTATTGATGACGTAGGTTCGTATAACACTATAGTATCAGCCTATGATTCATGGGATCAAGAACACATGGTGGATAGCACGACAGGCACAAACTTGAGCAGGAGATAAAAAGGATCAACGCAACTACGAGGAAAGAATGTTAGCAATGGAGCTTCGATGAGAACAAGTGGCGTCACCTTTTGTCCTCTTTCTTTCAGAGCTGAGTATCCCTGTTGCAAAAGATATCGAGGTGAGAATTTTGGTAAAGAATTATTCCAAAACTCATGCAAAAGTTGATAACTTTTCAAAGCTCACCAGTGCTGAACTGCTGATGGTTTTTTTAGATGATGGGAATTTTATAAAGCCGTCCCTGATTCTGAATCACACTGAGCTCATAATATACATGATCGGCGACCCCTTGATTTCCCCTTCTGCAGTCTTTCCTTGCATCCAGCATGCTGTCAAACAATGGTACAGTGCAGTAACATTTCAGGCAAAAGGAACACTAACATTGTGCATGTTTAACATAAGTCCGAAAGAGGACATTGAGCTGGCAAATATTATTTTCATGGAATAGTAGACTTGTGAAAATGGAGGTGAGCTTGCCAACTAAGAACATGCAGAGATTTTCCACAGATTATTCTTTACTCCGAAAGACTGAAACAGTCGGAATTTACATAATCCAGTTCTTAGTTCCATATAATATATACATCTAATTACATAGACAGTATCAGTCATCTGGAATGCATTCTGGGATTCAACAGTGCTTCGTCTTTATTTACACCATTGAGACGAGCCACGCTTTCAGGCCCAGTTTTTCCGCTTAGACCTCAGCAGCATCAGTTTGTCCCTCCACGTTGCAGCATCTTTGTATCTCTCTTCAACAGCTGCAATGAGCATGTTCCGGATCAATCCAAACTCTTGAGCCTCGACACATGGCTGCCCATCAGGTCTGTCAAGTTCTGTAAACAACAACCCGTCAGACATGCCGGCTGCTATCGCCATTCTTGCTGGCTCGACTGATCTTATGCCATCACTGTATGCAAGGCTTCTATGGACTTGTATAGGAACCTTGCAGCGAACAGCAATGTTTATGGCATCTGAAGGTCTTAGATCAAAGGTGATACTTTCTGTATGGTCACCTACCTTCGTCAGAAACAGTTCAGCACAGTATGCTTCTTGAATTCTTTTATTTATCCGAACCAGTTTTACCTCATAACCCATCTTATCAATCATCTCCTTCACAACTTGATATATGGTTGGTCTTGCAATGTGGACATTCCGAATAGCAGCCATCAGAAGTACGCTTGGCATTTCCAAAACAATGATTGGAAGTAAAGTTTCACTTCCATCTTCAATCCTCAAAACAATAGCAGGTTGTGGTGCGCTTTCTGGAATATTTCTCCCTTGAGAATTATTGTGCACACATCTCAAGTTTTTCCCATCTCGCATCTTGATTACATATCCCTCTGCCCCACTTCTCACCTCAACTGCTTCTAGCACAGTAGAATTAACATAATCTTCATCACTCTCACTAAAGTTTCCAGCCATATATCCATTACCATCGGACGACGAGCTGAAGCTACCGCAAACAGTAGCAAAGTTCTTTTGTGCCGGCTGATAGATTGGGGAAATGAGTCTAGTGATATTCCTGTATTTACACACACAACCCAGGAATGCGGTCCCAAGCTGCCCAGACTTGGTCAGTGAGTTGCTGATCATCGTGACAGGTAGCTTAGCTTGCATCACTGCACGACACAGGATTGGTCCCTCCATCGCCATCAATCTTGGATTCGATTCCAATCGAGGGCGGAGTCAGGTCGTCTCGCCCCCTCTCCAAACCAGCTCGCCCGCCTGGAGTGCGCGCGGCGCGGCGCGGCGCGATCGAGGAGGCAACGCGAACGCCGGCACGGGGGAAGAAGAGGAGGAGGAGGCTGCCGTCGACGGCGGCGCGCGCGGCGCGAGTAAGGTGTGGGTATATGATCTTCTCGACTTCTCCCGGGCTCCGGCTGTGCGGATCGGTGGGGGCTGAACTGAAGGCTTT

Explanation	CPC Score
noncoding (weak)	-0.747654

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0411400.2	8	16339650	A	C
Osa08LNT0411400.2	8	16340066	A	C
Osa08LNT0411400.2	8	16340351	G	A
Osa08LNT0411400.2	8	16340746	A	C
Osa08LNT0411400.2	8	16340783	C	T
Osa08LNT0411400.2	8	16341409	C	G
Osa08LNT0411400.2	8	16341523	C	G
Osa08LNT0411400.2	8	16343216	A	G
Osa08LNT0411400.2	8	16343253	A	T
Osa08LNT0411400.2	8	16343286	A	G
Osa08LNT0411400.2	8	16343358	T	C
Osa08LNT0411400.2	8	16343497	A	G
Osa08LNT0411400.2	8	16343922	C	T
Osa08LNT0411400.2	8	16344118	T	A
Osa08LNT0411400.2	8	16344861	A	G
Osa08LNT0411400.2	8	16344965	A	C
Osa08LNT0411400.2	8	16344969	G	T
Osa08LNT0411400.2	8	16345013	A	G
Osa08LNT0411400.2	8	16345151	G	A
Osa08LNT0411400.2	8	16341640	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0411400.2	osa-miR5828	Cleavage	4.5	16.722	1	21
Osa08LNT0411400.2	osa-miR1440b	Cleavage	4.5	22.094	1	21
Osa08LNT0411400.2	osa-miR169f.2	Cleavage	4.0	19.479	1	21
Osa08LNT0411400.2	osa-miR166g-5p	Translation	4.5	20.373	1	21
Osa08LNT0411400.2	osa-miR1849	Translation	4.5	19.087	1	21
Osa08LNT0411400.2	osa-miR1857-3p	Translation	5.0	16.625	1	21
Osa08LNT0411400.2	osa-miR2096-3p	Cleavage	5.0	9.246	1	21
Osa08LNT0411400.2	osa-miR2922	Translation	4.0	15.07	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0411400.2	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0411400.2	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0411400.2	8	hsa2(t)	Physiological trait	Sterility	nan	nan
Osa08LNT0411400.2	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus