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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0411700.1

TTTCAAAAGTTTCACATCTCATTGCACATTGCAAACCAACACAGTATGGTTTAGCCTGAATACAACCCAAAATTCACTGATACAATGGGCACACATCACTTAAACCATAGAACAAGGAAACAACACACTATCAAACCAACTGAACACACACCACCAACTAGCATGAGCTTCATCATCACCATCATCTCCCTCAAAATGAGCAACATATGATCAGCCTGCTTAAATTCTTCAACATCTGCATCTTTTCTAATCTCTTGAACCGTGCTCTTCTTCTTCACATCTGCATCCAGCTTGATTTCTTCAGTTCCCCTCTGCATTTCCCTCTGGTTTGCTTCATTCAGCAACTTTGCACAAGTGTTTTGCTCAATCAAGCCTTTCCTATTCAGGTATTTAATATACCCTTCCTCCCAATACCAAAAATCGCAACCACTTCCACCCTTCTCGTGTGAAGGGCATGTGAAGAATATGCGGCCTTGATTAGCTTCCGTGTTAGCAGTAAGCTCCACGATTTGCTTCACCCCGCATCAAGGGCACAAGATAAGTGGGATTGAGGTCCTCCGACGACGACGACTTGAACACAAAGAACAGCTTGCTAAGGCCATGGCTCATCAAGACTCGTTGCACCGCCCTCAACTGTCGGCCACTGCTGCTCGCACCGCCGTCGCCTCTCCGCCGCCACTATCTATCCATGCTACGAACAGAGTGAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.83172
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0411700.1 osa-miR164a Translation 4.0 7.841 1 21
Osa08LNT0411700.1 osa-miR164b Translation 4.0 7.841 1 21
Osa08LNT0411700.1 osa-miR395a Translation 4.5 11.553 1 21
Osa08LNT0411700.1 osa-miR164c Translation 4.5 7.841 1 21
Osa08LNT0411700.1 osa-miR164d Translation 4.0 7.841 1 21
Osa08LNT0411700.1 osa-miR164e Translation 4.0 7.841 1 21
Osa08LNT0411700.1 osa-miR164f Translation 4.0 7.841 1 21
Osa08LNT0411700.1 osa-miR815a Cleavage 4.5 6.877 1 21
Osa08LNT0411700.1 osa-miR815b Cleavage 4.5 6.877 1 21
Osa08LNT0411700.1 osa-miR815c Cleavage 4.5 6.877 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0411700.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0411700.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0411700.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0411700.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus