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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0411800.1

CTATGCTTGTCCACACTTCCTTAGGCACGCAAGGCCTTCTTCCTGGTATTCCTGCCTTGTAATCCAGAATTCAGGTGAATCCTTCATGATTCCAGCGAGTACTGCACCACCCAGGTAAACCATGTGTTTTCTCCGTGGCGGATCCTCTATCCGCAAACGCAATTTCTTCAGTCCATCTTTGTTTCCCTTCAGAACCACATCAAGATAGCGATCAAGCATTTCCTTCTCTAGTCGACTTGGCAGACCAGGATACATGGTACTTCCCCCACTCAGGACAATATGTTGATAAAGTGTCATCCGGTTGTCGATGTCCATTTCTTGAATGCAACGGAACGCCATATCTGCCATTCCATCACCCTCAACATCTATGAGTTCAGGAGTAAAAAGAGCCTCAGGAGCTTGAAACCGTTCAGTGCCCACTTTGATTACCCTTCCATAGTGTAGCTTTTGACAAGGATAGTGGTTTCAAGTCCTAGCTGGTATTCACGCTTGTAATCATAGCTTAAATAACATAGTTTCTCTTTTATTTCCCGGACTGTTTCAAAGTCGGCAGATTTGTTCATAGCATACCCTCTTCTTGAGAGTAGATCAACAAGATAAGATGTTATGTGCCTTCCAGCTACATTCATTCTTTTTGTAATATGTGGGTAAGAGAATCCATCAACTACCGGCACCACATGAGTGACACCATCACCAGAGTCTATGACAAGTCCAGTCAGCAAACCTTGAGCATATAGCGAAAGAACAGCTTGGACCTGGATGAATACCCCAGCAAAGTTGTATTTCTCAAACATTGTCTCAATCATTTTTTCACGATTTTTCACAGGATTGAGTGGTGGATCTGTCAGTAGAATTTTACACTCAGAAGGATCAACTTTCAGCTCACTGTAAAATGCATGATCCCATATATGGCCCATATCATCCCAACTTTGAACAATCCCATTTGTAACAGGATATGATACGTCAAGTTGATGCCTCAAGTCAGCACAAGCCGCTCCAACCACAATATCCGTCAATTCCTGCTCCTGGAGTGACTCCTCATAACGGAGCAATGGTCGCCCAACAACACAAGGGAACACAGATGTAGGGAAGTTCTCTCCCGCAAAGCCACACTTTACATACCCGGTGCCGTTGTCGCACACCACCACGTTCCCGCTGTCCATTCCGCCTCGCCGTCGCCGTCGCCGATCGTCTCCCCGCGCGCGCTTGGGAAGTTGGAAGGGAGAGGGGGAGGAACAGA

Coding Potentia
Explanation CPC Score
noncoding -1.37007
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0411800.1 8 17208221 G T
Osa08LNT0411800.1 8 17205129 A T
Osa08LNT0411800.1 8 17205135 G A
Osa08LNT0411800.1 8 17205225 A G
Osa08LNT0411800.1 8 17205227 C T
Osa08LNT0411800.1 8 17205424 C A
Osa08LNT0411800.1 8 17205659 A C
Osa08LNT0411800.1 8 17206082 G A
Osa08LNT0411800.1 8 17206901 A G
Osa08LNT0411800.1 8 17207766 G A
Osa08LNT0411800.1 8 17206284 C A
Osa08LNT0411800.1 8 17209277 T C
Osa08LNT0411800.1 8 17207371 C G
Osa08LNT0411800.1 8 17208034 T C
Osa08LNT0411800.1 8 17207394 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0411800.1 osa-miR815a Cleavage 5.0 12.341 1 21
Osa08LNT0411800.1 osa-miR815b Cleavage 5.0 12.341 1 21
Osa08LNT0411800.1 osa-miR815c Cleavage 5.0 12.341 1 21
Osa08LNT0411800.1 osa-miR5518 Translation 5.0 18.374 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0411800.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0411800.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0411800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0411800.1 8 hd8 Physiological trait Flowering RZ562 RG978
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus