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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0412000.1

CCCAATGTTTCCTCTTTTCCCTACTGAGAGAAATGATTGTGTCACCAACGGAAACTAACACCAATACTGAAACTAACACAGAAGTCGGTCCTGTACTTTCAAAAACTGAACCGACACTGTAAAATCCGATAGCACACATCAACCTATAACTATCTACAAGCATGCCAAATATAACATCGCAACTAGTAACACAAAAAGGCAAATTTTCATACACTCCATCGGACATTATACAAGCTGAAGCAGAAATAGGAAACCAGAAAAACTGCATACAGACTTCAGTAAGATTCTGTCCGCGACTCTCCTAACAATACAAGGGAACAAAGAAGCCAAGTTAGCATTCCAGGGGTTCTTCTCCCACCCAAGAAACCAGTGAACTGAAAATGCTCCCATGAAGGACATTTGATGTGGTTGAACTCATTGGTTACCACCATTGCGGCCACCATATCCTCTTCCTCGCCGCTGTTGCTGATTACGCCGCTGCTGGGCAATCTGCCGGCCAGGGGCAGTATTCGTCTGCTGCTGTGGAATGGTCCTCATCCTCTGCTGCTTCATTTGTGCAAAGAGCGCATCCATTGTCCTTGGTGCCTTGTTCTGCACCTCCTTCCCCTTCCCATTCTGAAAAGCCTGTCCTACAGGCCTCCGCTGTATTGAGTTAGATGGGGCACTTGGCTTGTTCCATCTGACACCCCTGCTACGTATTGGCATTGTAGCAGCCTTCTTTGCAGCCTGCTTTGTAGCTGCGAACTGATTTCCACCCAGATTTGTCCTCCTTTGTGCAAGAACCCCTTGTCTTAAGGACGATCTAGTTTCCATAAATCGCTGAACCTTTGCATTCCCTTGATTAGTGTTGTCATTCTGGAATGGACGTTTCTTGATAGGTTGTCTAGCAGGTTTCTTGCCTCCAGGATTCTTTTTCTTTGACATCTTAATAATATCATCTAAAGTCATGTCCATCTTTTTCTCGGTAAAAGCAATAGCTTCAGCAGTTAGTGGCACTGACTCCATCTCGGGATGTGGCGGGAGCAGCAGGACGACAGCGACGGCGGCGGTGGCCCTCCCCCCGCTTTGCTCGGGAGATGGAAATCGGCGCGCCGGCGGCGGTGGGCGAACTCGCAAGGAGCGGAGACGACGAGACGGGAGTTTTTTCTTTTTTTTTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.825151
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0412000.1 8 17522139 A G
Osa08LNT0412000.1 8 17522883 A G
Osa08LNT0412000.1 8 17523064 C T
Osa08LNT0412000.1 8 17519508 G A
Osa08LNT0412000.1 8 17519802 G A
Osa08LNT0412000.1 8 17519863 G A
Osa08LNT0412000.1 8 17519866 T C
Osa08LNT0412000.1 8 17520545 T A
Osa08LNT0412000.1 8 17521078 G C
Osa08LNT0412000.1 8 17521234 A C
Osa08LNT0412000.1 8 17522321 G A
Osa08LNT0412000.1 8 17522523 A T
Osa08LNT0412000.1 8 17522639 A T
Osa08LNT0412000.1 8 17522645 T C
Osa08LNT0412000.1 8 17522876 G T
Osa08LNT0412000.1 8 17522898 T G
Osa08LNT0412000.1 8 17522955 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0412000.1 osa-miR1860-3p Cleavage 5.0 13.745 1 22
Osa08LNT0412000.1 osa-miR827 Translation 5.0 21.482 1 21
Osa08LNT0412000.1 osa-miR2091-5p Translation 5.0 21.073 1 21
Osa08LNT0412000.1 osa-miR2870 Cleavage 5.0 16.836 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0412000.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0412000.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0412000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0412000.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus