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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0412400.1

TTCATTTCAATTTCCATGCAAATTAATAGTTAAAAAAAAGATCAGTACTCCATTTCATACAACCAAGCACAATACACTGCACATGTCTAACTTATAAACTGAGAAAAAAATCAAGCTGAATTTGAAGAGAAAGTGTACATTCCATCGAAACTGAACTCGAGTCATCCACCAAATACACCTATAATTATTTAATGGGAGCCTTCAATTTGAATTGTGAAATATACCCATATTCTTGTGGGGGCCAAGAATGTTAACTGCGGTGGATTTACGGGCCAAGTCTTTTTGTGGATTACATGAACAGATACCTATGAAATCCAGATAACAAGATGGTCAGCTTCCTGAAGTGAATACAATTTTAGAGGTGAAAGTTTGAAGAGAAGTAAAAAATTTAAACAAGAATCAATGGTGTCAAGCATGAAAGGAACTAAACTGAAGCCAAAATTTTATCAACCACTAATCACATGCACAATTGAGTTTTTTTTGTACAAATATTCTGCAATACAAATTGACATGGGTTTGAGTATTTGAGAAAATACATAAAAAGAAAATCAATGCTCCAGATAATACACTTATAGAAGGAATATCTTCAGTAAGTTCAAGTCTCAAAATTCTTCCTGATTTTCCTCGTGCTTAACAGTTATGAGAAGAAAAGCTGAATATTCTTGATCTGTAACTGTCACTTGATTGTATTATGACATGAAAAACTGAGTATTCTTTGAGTAATGGAAATTAAAAAATATATAACATTATAGAACATGAGGGAATAAGTTGTGAATCATCAAATAGTTTGATACCTCTTTGCAAATAAGCATTGAATGAAAAAAATAGTTGCTAAGTTGGTACAGATTTTGCAGGACTCGTAGTGGCAAAAGCAAATACCAAATATTTAGCCCTACCAAATAAAGATATTCACATATAGAATTGTGTGCATTCTAGTTTTTCCGGACTCCTAGTAAAAAACTGTCAATTGCCAATTTACACTCCTAGAGAAGGACATCTCAAAGTGCCAGACTCCTGTGTCTGACTACATATCCATGAAAATCAAGTAAGTCTTGTCAAATACTCTTGCAGTCTTGCATTCTCAAAACGACACAATTGTGAACTTGGTTGCTCAAGGATAACAAAACTGAAGCACACGTGTTTGCTAAAAATGATTAATTTGAATGAGATACACACCTCATAAACCAGACTTGATATTGTAAAACAAGAGTAAACCACTCTAGAACAGCTTCTACAGTTCACAGCTTATAACTTTTAAATAACATATCCCATCTCCATATGAAGCAACGTTATTTCAACTTGTTCTAAAAACACAATATACATAGAGATTTTGTCCCACAAAACTTCTTAAGCTATACATGAACTGAACTTGCGAAATAAAAATATCAAACAACAAATACAGATACTAAAATATATGGAAGCTCTCTTCTTAAAACGCATGAAAGCATTTCTGGTAAGAATGTACCCAAGATTTTAGAACAATGATCCTAACGACAAACCTGGAATATCAAACTGCAAAAATAGATGGCTTGTTTGTTTCGAAACATACCATTCCCTCGAGCTAGCTAGCAAAACTGAAAATATTTTTCCCTAACTATGATCTTAACGGCATACCAAGAACTAACATAACTTGCATCGTACTTATGAAGTGCATGCCTCGTACCTTCGGATTATGCCATTGAAAAGGACTCTTTATAAGAAAATGAACACAACAGAATCATTGTATGAAAAATGAAATTGTGCATTTTGTAGCTCTAAACTTCTAGAGCATAGAATTGGAAAATGAAATTGTAGGCCACAATAATAGGTGGATATTCAGATATGACATTCAGGTCGAGTGCTAAAAATTTTACCCCGGCAATGGATTTACAAAATAGACCACAATATTTAGTCATGGAATTCATGCTCTTTCTTCTTCTTCACCGTTGCTCATGTTGTCACAATTAACTGAAATCACCAAAATTTATAGATAAATGTTATCGACCTACCGTATTCCTGAAAAAAAAATGTTAGCCTACTACAAACCTCTGGGCAAAGCTACCCTTTCAAAGTATTGAGTTATTGACAGTCTGCAATTATGCCTGTGAGAAGGAAATCTGCCATTTTCCTACGGCAAATTCAGATAGTGACAAAACTGATCTTGGCTTGATCAAAGATTAAATCTGCATGGCTTGATTACATGCAAAGAAGGCACATATTTTTTTTGGAATGGGATATCCTCAGCTTCTTGACCAACTGCTTGCACATTAGGACTCCCGTTTTGACCCACTTTATCTATTCAACAAAGCAAAGCATGCAGACATTTTTCGTCTAGAGGAATATCTGACTATTCATTGCTTTTGGTCAAGTCCAAACCAAGAAGATCCAAGACGTACCAGACTCTCTCACCGCAGCAGCTACCTTCAAAAGCACTAAGAAGTTGTATTTGCCAGGTAACATTGCAAGTGAAGCATTACCTGTGGTAGATTAAATCGAACTGATTTCTTTGAGGTGGGAAGGAGGAGGCGCAGTCGAGAACACGCTCGGCGGGAGCAAGCACTGGTCTTCCCTCCCGCCGGATCTCCATCGCACCGCTTCAATCCCCACCGTCAGGTCTCCTCTCCCTTGCAGGCTGTCGCCGAAGACCACGATCAAGTGCAGATGTGAGCAATCGAAGACGTGGCAGCCTGGATCTGGGCAAAGGACCATGGCAGGGAGTCTTGGATTTGGAGCACACCTAGGGAGGGAGGACT

Coding Potentia
Explanation CPC Score
noncoding -1.28842
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0412400.1 8 18527791 T A
Osa08LNT0412400.1 8 18527902 G C
Osa08LNT0412400.1 8 18528244 A T
Osa08LNT0412400.1 8 18529213 C T
Osa08LNT0412400.1 8 18529274 T A
Osa08LNT0412400.1 8 18529442 T C
Osa08LNT0412400.1 8 18529471 G T
Osa08LNT0412400.1 8 18529905 T C
Osa08LNT0412400.1 8 18530254 A T
Osa08LNT0412400.1 8 18530361 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0412400.1 osa-miR1319b Translation 4.5 14.673 1 24
Osa08LNT0412400.1 osa-miR1319b Translation 5.0 13.688 1 24
Osa08LNT0412400.1 osa-miR166k-5p Translation 4.0 10.217 1 21
Osa08LNT0412400.1 osa-miR166k-5p Translation 5.0 9.34 1 21
Osa08LNT0412400.1 osa-miR2864.2 Translation 5.0 12.933 1 21
Osa08LNT0412400.1 osa-miR2880 Cleavage 5.0 12.312 1 24
Osa08LNT0412400.1 osa-miR5154 Cleavage 5.0 6.894 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0412400.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0412400.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0412400.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus