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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0412600.1

ACCATTTGTAATCTTTAGGTGGAGTCGGCATCTCCAACATGATTGGCAAGATTGCGCGACACGAGTACATGGGTTTCGACAACATCAGTAGTTTAGTTTCTTCATCAGTTAGTCCATTCAGAAAATGATAAATTATACCAGTATAACATGACAGCGTTCAGGTTGTGGACCAACTCTTTTCCTAAGTACTGACCAAATCAGTAGAGTTGGTTTTCCTGAAATAACTCCCCAAGTTGGGCGCTGAATTCTTCTTGTGCAGAGTCCAAGTTCTTTCCAAATGGCTTACTCTAGTACATTATCCAGCCGCAGGAAAACACCAGTAGCACTGTAGCAGAGTGGAGCAGAGGCTGCAGCACGGTGAGCAGTGAGGATGGAGCTGCAACACGCAAGCTGTGGACTCACGACGGCTGTGATGGACGGCAAGTGCGGGATGGATGGGCAGCAGCCGCGATGGGCAGCGATGCCGCTGCCGCGACGGAGAAGGCGAGGCCGGGACGGAGTAGATCGACGCGGTGGCCAGCAGTCGACGGCGGATTGGACGCCCCGACGGTCTTCCCCGGCAGCGAGGATGGCGCGTGGCTACAGGACTCAGGAGTAGCCGCGACGGACGACGACGAGATCTGCCACGACGGGTGGCAGGCTGCAACGGTGGAGAAGCGATGCGGCGCCGCGATAGGCGATGGCTGCGACCGGAACGGGATCGGATTTTTTCCGGACCGGAAAAAATTCTGGTGC

Coding Potentia
Explanation CPC Score
noncoding -1.17853
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0412600.1 8 18461276 C T
Osa08LNT0412600.1 8 18461189 C A
Osa08LNT0412600.1 8 18457702 T C
Osa08LNT0412600.1 8 18457800 T C
Osa08LNT0412600.1 8 18458881 T C
Osa08LNT0412600.1 8 18459130 G T
Osa08LNT0412600.1 8 18459608 G T
Osa08LNT0412600.1 8 18461508 T G
Osa08LNT0412600.1 8 18461120 G C
Osa08LNT0412600.1 8 18461458 G A
Osa08LNT0412600.1 8 18458810 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0412600.1 osa-miR166c-5p Translation 4.5 19.909 1 20
Osa08LNT0412600.1 osa-miR1856 Cleavage 4.5 16.896 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0412600.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0412600.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0412600.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus