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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0412800.1

CCTCCACCTCCCCTTTCGTCTCTCCTTCCTCCCCCTTCCCCTCTCCTCCCCCTCCCCGCCTCCTCCTCTCCAAGCGGCCGAGCGACAGCCAAGCCCAGGCGGCGGGGACGGCACCGAACCCAGGCACCGAGGGCGGCAGATGGCGGGTGGAAGGGAGGGCGGCGGGAGCCGGCGGCCGGCGGCGCCCTCCCCTCTTCCGGCAGGGAGGCAGGAGGCGACAGCGGCAGCATTTTGTTGTTCTTTTTTTTTTAAGAATTTGCGATACATTGGATCTGAGAATTTTTAGAAGTTGAGATTCATTAGATTTGTGATGTATAATCTGTGATGATTTTTTTAAGAATTTGGTATGTTTTTTCTTTTGATAATTTGTGATGTGAATATATGATTCATTGATTTCTGATGATACTTTGATTTTGATTTGGGAATATGTAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.97838
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0412800.1 8 18605385 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0412800.1 osa-miR2101-5p Translation 3.0 7.129 1 22
Osa08LNT0412800.1 osa-miR2919 Cleavage 2.5 1.199 1 19
Osa08LNT0412800.1 osa-miR5513 Cleavage 4.5 14.154 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0412800.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0412800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0412800.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus