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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0037800.2

AGCGCCACCGCACTGCGCACCCGCCCCGACGCAATGGCCACCGCCGCCGCCGCGAGATCGTTCCTTCGATCGGGAGTCGCCTCCTCCTCGTCCATCCGCGGCGCCGCCGCGAGAGCCGCATCCCGAGCCGGGCCGGCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCACAGCGCCACGGCGTCGGCGCTCATGACGTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGGTCAAGACGAAACTAGATGAACACCAAGCACCAAAGGTGAATAAACCTTAAGGATTCACATACTAATAACTGTTGATGGATAGTTCCCATCACTAATTTATGGCTCTGAAGGATTTACGGAGACAAGATACCTTTATTTAAAGGAATGCATTGTACGCTTCATCATTAATAAGTAAACATGTAGCTGGAGTGCAGGAAATGAAAACCAAACTATGTTTCATCGTGCTATTCCACAGTCCGGATAATTTAGAGTTATCCTTTTGTTGTTTTTTCTCGTGTTATGTCACAAGCATACATTTAGACCTTTTGTGTTGCCGGATCAAAACTCTCCCAAGAGCGACATTTTCAAATCATAGACCATTTTAGTTCGATCGTTTACCCCCTTAGGTTTTATTGAAACTGTTTGTAATTTGTAGGTTTAATATTGAAGTAGAGTTTCAATTTATAATAATGTGCTAATCATCATGAATTACAAATTTGAGGCAAAAGGGACACTGATTCTTTTGTATTGGCCCAGCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAGATGGATGATTTGTTGTTATCGGAGCCTGATGTGACGATAGCTGCTACGAGATACCTCCTATTCAATTTAAAGTACTTTCCGTCGGCGTCTTCTGAGCGACATGTTCAGTATTCTGGGATTTTGGTCTGTGTAAGCGTCTACAAGATTGTTACCTGATCGTTGCGACGCTTACCTCCGGTTGTCCAACTGATTTTACTATTGATGGCCTACTACTGATTAAGTCCCGCTGAGAAAATAATGCTGAGTTGGAAATTTTCTAATTCTACATTGTTTTGCTTCTATCTGCACTGTTACTGTATTATGTACAGCGACAGTTTCGTACCTTATTACTACAGCAGTACAGTATTATCGTGTTGTATTAAGCTGGAGACGCCGTTACTCTC

Coding Potentia
Explanation CPC Score
noncoding -1.06047
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0037800.2 1 31636148 A G
Osa01LNT0037800.2 1 31636506 T G
Osa01LNT0037800.2 1 31636764 A G
Osa01LNT0037800.2 1 31637866 C T
Osa01LNT0037800.2 1 31638186 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0037800.2 osa-miR2105 Translation 4.5 13.005 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0037800.2 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0037800.2 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0037800.2 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0037800.2 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0037800.2 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0037800.2 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus